AT1G25360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 48992 Blast hits to 14461 proteins in 282 species: Archae - 2; Bacteria - 7; Metazoa - 148; Fungi - 100; Plants - 48130; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8894428..8896800 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88590.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 790 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQPNPDLVRA IANRYAANLR LCLPLRRTSL QLARAVHGNI ITFGFQPRAH ILNRLIDVYC KSSELNYARQ LFDEISEPDK IARTTMVSGY CASGDITLAR 101: GVFEKAPVCM RDTVMYNAMI TGFSHNNDGY SAINLFCKMK HEGFKPDNFT FASVLAGLAL VADDEKQCVQ FHAAALKSGA GYITSVSNAL VSVYSKCASS 201: PSLLHSARKV FDEILEKDER SWTTMMTGYV KNGYFDLGEE LLEGMDDNMK LVAYNAMISG YVNRGFYQEA LEMVRRMVSS GIELDEFTYP SVIRACATAG 301: LLQLGKQVHA YVLRREDFSF HFDNSLVSLY YKCGKFDEAR AIFEKMPAKD LVSWNALLSG YVSSGHIGEA KLIFKEMKEK NILSWMIMIS GLAENGFGEE 401: GLKLFSCMKR EGFEPCDYAF SGAIKSCAVL GAYCNGQQYH AQLLKIGFDS SLSAGNALIT MYAKCGVVEE ARQVFRTMPC LDSVSWNALI AALGQHGHGA 501: EAVDVYEEML KKGIRPDRIT LLTVLTACSH AGLVDQGRKY FDSMETVYRI PPGADHYARL IDLLCRSGKF SDAESVIESL PFKPTAEIWE ALLSGCRVHG 601: NMELGIIAAD KLFGLIPEHD GTYMLLSNMH AATGQWEEVA RVRKLMRDRG VKKEVACSWI EMETQVHTFL VDDTSHPEAE AVYIYLQDLG KEMRRLGYVP 701: DTSFVLHDVE SDGHKEDMLT THSEKIAVAF GLMKLPPGTT IRIFKNLRTC GDCHNFFRFL SWVVQRDIIL RDRKRFHHFR NGECSCGNFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)