AT3G08820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39810 Blast hits to 14024 proteins in 269 species: Archae - 0; Bacteria - 17; Metazoa - 144; Fungi - 84; Plants - 38977; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2677122..2679179 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77330.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 685 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIVTVPSAT SKVQQIKTLI SVACTVNHLK QIHVSLINHH LHHDTFLVNL LLKRTLFFRQ TKYSYLLFSH TQFPNIFLYN SLINGFVNNH LFHETLDLFL 101: SIRKHGLYLH GFTFPLVLKA CTRASSRKLG IDLHSLVVKC GFNHDVAAMT SLLSIYSGSG RLNDAHKLFD EIPDRSVVTW TALFSGYTTS GRHREAIDLF 201: KKMVEMGVKP DSYFIVQVLS ACVHVGDLDS GEWIVKYMEE MEMQKNSFVR TTLVNLYAKC GKMEKARSVF DSMVEKDIVT WSTMIQGYAS NSFPKEGIEL 301: FLQMLQENLK PDQFSIVGFL SSCASLGALD LGEWGISLID RHEFLTNLFM ANALIDMYAK CGAMARGFEV FKEMKEKDIV IMNAAISGLA KNGHVKLSFA 401: VFGQTEKLGI SPDGSTFLGL LCGCVHAGLI QDGLRFFNAI SCVYALKRTV EHYGCMVDLW GRAGMLDDAY RLICDMPMRP NAIVWGALLS GCRLVKDTQL 501: AETVLKELIA LEPWNAGNYV QLSNIYSVGG RWDEAAEVRD MMNKKGMKKI PGYSWIELEG KVHEFLADDK SHPLSDKIYA KLEDLGNEMR LMGFVPTTEF 601: VFFDVEEEEK ERVLGYHSEK LAVALGLIST DHGQVIRVVK NLRVCGDCHE VMKLISKITR REIVVRDNNR FHCFTNGSCS CNDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)