AT5G56310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22802322..22803914 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59194.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIQRINALSL SSGLNWFVTS LKIHGNNLKT LKQSHCYMII TGLNRDNLNV AKFIEACSNA GHLRYAYSVF THQPCPNTYL HNTMIRALSL LDEPNAHSIA 101: ITVYRKLWAL CAKPDTFTFP FVLKIAVRVS DVWFGRQIHG QVVVFGFDSS VHVVTGLIQM YFSCGGLGDA RKMFDEMLVK DVNVWNALLA GYGKVGEMDE 201: ARSLLEMMPC WVRNEVSWTC VISGYAKSGR ASEAIEVFQR MLMENVEPDE VTLLAVLSAC ADLGSLELGE RICSYVDHRG MNRAVSLNNA VIDMYAKSGN 301: ITKALDVFEC VNERNVVTWT TIIAGLATHG HGAEALAMFN RMVKAGVRPN DVTFIAILSA CSHVGWVDLG KRLFNSMRSK YGIHPNIEHY GCMIDLLGRA 401: GKLREADEVI KSMPFKANAA IWGSLLAASN VHHDLELGER ALSELIKLEP NNSGNYMLLA NLYSNLGRWD ESRMMRNMMK GIGVKKMAGE SSIEVENRVY 501: KFISGDLTHP QVERIHEILQ EMDLQIQSKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)