AT1G09190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:2966263..2967717 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53965.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIERKLLRL LHGHNTRTRL PEIHAHLLRH FLHGSNLLLA HFISICGSLS NSDYANRVFS HIQNPNVLVF NAMIKCYSLV GPPLESLSFF SSMKSRGIWA 101: DEYTYAPLLK SCSSLSDLRF GKCVHGELIR TGFHRLGKIR IGVVELYTSG GRMGDAQKVF DEMSERNVVV WNLMIRGFCD SGDVERGLHL FKQMSERSIV 201: SWNSMISSLS KCGRDREALE LFCEMIDQGF DPDEATVVTV LPISASLGVL DTGKWIHSTA ESSGLFKDFI TVGNALVDFY CKSGDLEAAT AIFRKMQRRN 301: VVSWNTLISG SAVNGKGEFG IDLFDAMIEE GKVAPNEATF LGVLACCSYT GQVERGEELF GLMMERFKLE ARTEHYGAMV DLMSRSGRIT EAFKFLKNMP 401: VNANAAMWGS LLSACRSHGD VKLAEVAAME LVKIEPGNSG NYVLLSNLYA EEGRWQDVEK VRTLMKKNRL RKSTGQSTIC DVSV |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)