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AT3G26782.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38241 Blast hits to 13696 proteins in 226 species: Archae - 0; Bacteria - 8; Metazoa - 60; Fungi - 36; Plants - 37696; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB016889EMBL:AK228506
EMBL:CP002686EnsemblPlants:AT3G26782EnsemblPlants:AT3G26782.1entrez:5008030
Gene3D:1.25.40.10GeneID:5008030Genevisible:Q9LW32GO:GO:0005739
GO:GO:0008270Gramene:AT3G26782.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF478
HOGENOM:HOG000237570InParanoid:Q9LW32InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT3G26782OMA:HIYADAGPaxDb:Q9LW32
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfam:PF14432Pfam:Q9LW32Pfscan:PS51375PhylomeDB:Q9LW32
PRIDE:Q9LW32PRO:PR:Q9LW32PROSITE:PS51375ProteinModelPortal:Q9LW32
Proteomes:UP000006548RefSeq:NP_001078212.1SMR:Q9LW32STRING:3702.AT3G26782.1
TAIR:AT3G26782TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.71198
UniProt:Q9LW32
Coordinates (TAIR10) chr3:+:9850594..9852682
Molecular Weight (calculated) 73770.20 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.04
Length 659 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVRSKKALF CSVSRLLHTE RHTERQNLTT LFNRYVDKTD VFSWNSVIAD LARSGDSAEA LLAFSSMRKL SLYPTRSSFP CAIKACSSLF DIFSGKQTHQ
101: QAFVFGYQSD IFVSSALIVM YSTCGKLEDA RKVFDEIPKR NIVSWTSMIR GYDLNGNALD AVSLFKDLLV DENDDDDAMF LDSMGLVSVI SACSRVPAKG
201: LTESIHSFVI KRGFDRGVSV GNTLLDAYAK GGEGGVAVAR KIFDQIVDKD RVSYNSIMSV YAQSGMSNEA FEVFRRLVKN KVVTFNAITL STVLLAVSHS
301: GALRIGKCIH DQVIRMGLED DVIVGTSIID MYCKCGRVET ARKAFDRMKN KNVRSWTAMI AGYGMHGHAA KALELFPAMI DSGVRPNYIT FVSVLAACSH
401: AGLHVEGWRW FNAMKGRFGV EPGLEHYGCM VDLLGRAGFL QKAYDLIQRM KMKPDSIIWS SLLAACRIHK NVELAEISVA RLFELDSSNC GYYMLLSHIY
501: ADAGRWKDVE RVRMIMKNRG LVKPPGFSLL ELNGEVHVFL IGDEEHPQRE KIYEFLAELN RKLLEAGYVS NTSSVCHDVD EEEKEMTLRV HSEKLAIAFG
601: IMNTVPGSTV NVVKNLRVCS DCHNVIKLIS KIVDREFVVR DAKRFHHFKD GGCSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)