AT3G26782.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38241 Blast hits to 13696 proteins in 226 species: Archae - 0; Bacteria - 8; Metazoa - 60; Fungi - 36; Plants - 37696; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:9850594..9852682 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 73770.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKVRSKKALF CSVSRLLHTE RHTERQNLTT LFNRYVDKTD VFSWNSVIAD LARSGDSAEA LLAFSSMRKL SLYPTRSSFP CAIKACSSLF DIFSGKQTHQ 101: QAFVFGYQSD IFVSSALIVM YSTCGKLEDA RKVFDEIPKR NIVSWTSMIR GYDLNGNALD AVSLFKDLLV DENDDDDAMF LDSMGLVSVI SACSRVPAKG 201: LTESIHSFVI KRGFDRGVSV GNTLLDAYAK GGEGGVAVAR KIFDQIVDKD RVSYNSIMSV YAQSGMSNEA FEVFRRLVKN KVVTFNAITL STVLLAVSHS 301: GALRIGKCIH DQVIRMGLED DVIVGTSIID MYCKCGRVET ARKAFDRMKN KNVRSWTAMI AGYGMHGHAA KALELFPAMI DSGVRPNYIT FVSVLAACSH 401: AGLHVEGWRW FNAMKGRFGV EPGLEHYGCM VDLLGRAGFL QKAYDLIQRM KMKPDSIIWS SLLAACRIHK NVELAEISVA RLFELDSSNC GYYMLLSHIY 501: ADAGRWKDVE RVRMIMKNRG LVKPPGFSLL ELNGEVHVFL IGDEEHPQRE KIYEFLAELN RKLLEAGYVS NTSSVCHDVD EEEKEMTLRV HSEKLAIAFG 601: IMNTVPGSTV NVVKNLRVCS DCHNVIKLIS KIVDREFVVR DAKRFHHFKD GGCSCGDYW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)