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AT1G32415.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G53600.1); Has 53053 Blast hits to 14536 proteins in 238 species: Archae - 0; Bacteria - 16; Metazoa - 90; Fungi - 108; Plants - 52105; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007767EMBL:CP002684
EnsemblPlants:AT1G32415EnsemblPlants:AT1G32415.1entrez:840135Gene3D:1.25.40.10
GeneID:840135GO:GO:0005739Gramene:AT1G32415.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF461HOGENOM:HOG000237570InParanoid:P0C7R0InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G32415OMA:ERNIVTCPaxDb:P0C7R0
Pfam:P0C7R0Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:PF13812Pfscan:PS51375PhylomeDB:P0C7R0PIR:B86449
PRIDE:P0C7R0PRO:PR:P0C7R0PROSITE:PS51375ProteinModelPortal:P0C7R0
Proteomes:UP000006548RefSeq:NP_564401.1SMR:P0C7R0STRING:3702.AT1G32415.1
SUPFAM:SSF48452TAIR:AT1G32415TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.51879UniProt:P0C7R0
Coordinates (TAIR10) chr1:+:11695611..11697896
Molecular Weight (calculated) 85021.80 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.11
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MRALCVKKVC GFLSKLSLRS SISCRRYYGD KIPNYGSYRR GFSNEEALIL RRLSEGGLVH ARHLLDKIPQ RGSINRVVYW TSLLSKYAKT GYLDEARVLF
101: EVMPERNIVT CNAMLTGYVK CRRMNEAWTL FREMPKNVVS WTVMLTALCD DGRSEDAVEL FDEMPERNVV SWNTLVTGLI RNGDMEKAKQ VFDAMPSRDV
201: VSWNAMIKGY IENDGMEEAK LLFGDMSEKN VVTWTSMVYG YCRYGDVREA YRLFCEMPER NIVSWTAMIS GFAWNELYRE ALMLFLEMKK DVDAVSPNGE
301: TLISLAYACG GLGVEFRRLG EQLHAQVISN GWETVDHDGR LAKSLVHMYA SSGLIASAQS LLNESFDLQS CNIIINRYLK NGDLERAETL FERVKSLHDK
401: VSWTSMIDGY LEAGDVSRAF GLFQKLHDKD GVTWTVMISG LVQNELFAEA ASLLSDMVRC GLKPLNSTYS VLLSSAGATS NLDQGKHIHC VIAKTTACYD
501: PDLILQNSLV SMYAKCGAIE DAYEIFAKMV QKDTVSWNSM IMGLSHHGLA DKALNLFKEM LDSGKKPNSV TFLGVLSACS HSGLITRGLE LFKAMKETYS
601: IQPGIDHYIS MIDLLGRAGK LKEAEEFISA LPFTPDHTVY GALLGLCGLN WRDKDAEGIA ERAAMRLLEL DPVNAPGHVA LCNVYAGLGR HDMEKEMRKE
701: MGIKGVKKTP GCSWVVVNGR ANVFLSGDKS ASEAAQMVLP IFCGNEMLEE EEEKPLSLCH C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)