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AT4G39952.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1); Has 47712 Blast hits to 13890 proteins in 262 species: Archae - 2; Bacteria - 17; Metazoa - 157; Fungi - 156; Plants - 46708; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035708EMBL:AL161596
EMBL:CP002687EnsemblPlants:AT4G39952EnsemblPlants:AT4G39952.1entrez:830155
Gene3D:1.25.40.10GeneID:830155GO:GO:0005739Gramene:AT4G39952.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF474HOGENOM:HOG000083857InParanoid:Q3E9N1
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G39952OMA:HCYSIKH
PaxDb:Q3E9N1Pfam:PF01535Pfam:PF13041Pfam:Q3E9N1
Pfscan:PS51375PhylomeDB:Q3E9N1PRIDE:Q3E9N1PRO:PR:Q3E9N1
PROSITE:PS51375ProteinModelPortal:Q3E9N1Proteomes:UP000006548RefSeq:NP_680777.2
SMR:Q3E9N1STRING:3702.AT4G39952.1SUPFAM:SSF48452TAIR:AT4G39952
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.54663UniProt:Q3E9N1
Coordinates (TAIR10) chr4:+:18527680..18530007
Molecular Weight (calculated) 85832.70 Da
IEP (calculated) 6.65
GRAVY (calculated) 0.04
Length 775 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRRLLKPNL VVTLRKLSSS SASYVDRHIS VILCDQSLSL ESLRKHNALI ITGGLSENIF VASKLISSYA SYGKPNLSSR VFHLVTRRDI FLWNSIIKAH
101: FSNGDYARSL CFFFSMLLSG QSPDHFTAPM VVSACAELLW FHVGTFVHGL VLKHGGFDRN TAVGASFVYF YSKCGFLQDA CLVFDEMPDR DVVAWTAIIS
201: GHVQNGESEG GLGYLCKMHS AGSDVDKPNP RTLECGFQAC SNLGALKEGR CLHGFAVKNG LASSKFVQSS MFSFYSKSGN PSEAYLSFRE LGDEDMFSWT
301: SIIASLARSG DMEESFDMFW EMQNKGMHPD GVVISCLINE LGKMMLVPQG KAFHGFVIRH CFSLDSTVCN SLLSMYCKFE LLSVAEKLFC RISEEGNKEA
401: WNTMLKGYGK MKCHVKCIEL FRKIQNLGIE IDSASATSVI SSCSHIGAVL LGKSLHCYVV KTSLDLTISV VNSLIDLYGK MGDLTVAWRM FCEADTNVIT
501: WNAMIASYVH CEQSEKAIAL FDRMVSENFK PSSITLVTLL MACVNTGSLE RGQMIHRYIT ETEHEMNLSL SAALIDMYAK CGHLEKSREL FDAGNQKDAV
601: CWNVMISGYG MHGDVESAIA LFDQMEESDV KPTGPTFLAL LSACTHAGLV EQGKKLFLKM HQYDVKPNLK HYSCLVDLLS RSGNLEEAES TVMSMPFSPD
701: GVIWGTLLSS CMTHGEFEMG IRMAERAVAS DPQNDGYYIM LANMYSAAGK WEEAERAREM MRESGVGKRA GHSVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)