AT5G19020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitochondrial editing factor 18 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitochondrial editing factor 18 (MEF18); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6352771..6354828 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76251.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 685 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKLIRFFRS RRCWVISLQA RCFSAPSRTH FDFSGESSDT ERALVSALGS CASSNDVTCG RQIHCRVLKS GLDSNGYICN SVLNMYAKCR LLADAESVFR 101: DHAKLDSASF NIMVDGYVRS RRLWDALKLF DVMPERSCVS YTTLIKGYAQ NNQWSEAMEL FREMRNLGIM LNEVTLATVI SACSHLGGIW DCRMLQSLAI 201: KLKLEGRVFV STNLLHMYCL CLCLKDARKL FDEMPERNLV TWNVMLNGYS KAGLIEQAEE LFDQITEKDI VSWGTMIDGC LRKNQLDEAL VYYTEMLRCG 301: MKPSEVMMVD LLSASARSVG SSKGLQLHGT IVKRGFDCYD FLQATIIHFY AVSNDIKLAL QQFEASVKDH IASRNALIAG FVKNGMVEQA REVFDQTHDK 401: DIFSWNAMIS GYAQSLSPQL ALHLFREMIS SSQVKPDAIT MVSVFSAISS LGSLEEGKRA HDYLNFSTIP PNDNLTAAII DMYAKCGSIE TALNIFHQTK 501: NISSSTISPW NAIICGSATH GHAKLALDLY SDLQSLPIKP NSITFVGVLS ACCHAGLVEL GKTYFESMKS DHGIEPDIKH YGCMVDLLGK AGRLEEAKEM 601: IKKMPVKADV MIWGMLLSAS RTHGNVEIAE LAATELAAID PSHGGCKVML SNVYADAGRW EDVALVREEM RTRDVEWSRA FSGVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)