AT2G35030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 50772 Blast hits to 15060 proteins in 312 species: Archae - 12; Bacteria - 55; Metazoa - 198; Fungi - 231; Plants - 49530; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14761080..14762963 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71414.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSRALSRLR SYYKRSSVFP SSDNDRSVQL FNLVRSIYSS SSRPRVPQPE WLIGELCKVG KIAEARKLFD GLPERDVVTW THVITGYIKL GDMREARELF 101: DRVDSRKNVV TWTAMVSGYL RSKQLSIAEM LFQEMPERNV VSWNTMIDGY AQSGRIDKAL ELFDEMPERN IVSWNSMVKA LVQRGRIDEA MNLFERMPRR 201: DVVSWTAMVD GLAKNGKVDE ARRLFDCMPE RNIISWNAMI TGYAQNNRID EADQLFQVMP ERDFASWNTM ITGFIRNREM NKACGLFDRM PEKNVISWTT 301: MITGYVENKE NEEALNVFSK MLRDGSVKPN VGTYVSILSA CSDLAGLVEG QQIHQLISKS VHQKNEIVTS ALLNMYSKSG ELIAARKMFD NGLVCQRDLI 401: SWNSMIAVYA HHGHGKEAIE MYNQMRKHGF KPSAVTYLNL LFACSHAGLV EKGMEFFKDL VRDESLPLRE EHYTCLVDLC GRAGRLKDVT NFINCDDARL 501: SRSFYGAILS ACNVHNEVSI AKEVVKKVLE TGSDDAGTYV LMSNIYAANG KREEAAEMRM KMKEKGLKKQ PGCSWVKVGK QNHLFVVGDK SHPQFEALDS 601: ILSDLRNKMR KNKNVTSDAE EAEFLVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)