AT3G49710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 44619 Blast hits to 14217 proteins in 272 species: Archae - 0; Bacteria - 17; Metazoa - 134; Fungi - 114; Plants - 43678; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18437845..18440010 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81344.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 721 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQTPWKFKT FRDLLLKSVA ERDLFTGKSL HALYVKSIVA SSTYLSNHFV NLYSKCGRLS YARAAFYSTE EPNVFSYNVI VKAYAKDSKI HIARQLFDEI 101: PQPDTVSYNT LISGYADARE TFAAMVLFKR MRKLGFEVDG FTLSGLIAAC CDRVDLIKQL HCFSVSGGFD SYSSVNNAFV TYYSKGGLLR EAVSVFYGMD 201: ELRDEVSWNS MIVAYGQHKE GAKALALYKE MIFKGFKIDM FTLASVLNAL TSLDHLIGGR QFHGKLIKAG FHQNSHVGSG LIDFYSKCGG CDGMYDSEKV 301: FQEILSPDLV VWNTMISGYS MNEELSEEAV KSFRQMQRIG HRPDDCSFVC VTSACSNLSS PSQCKQIHGL AIKSHIPSNR ISVNNALISL YYKSGNLQDA 401: RWVFDRMPEL NAVSFNCMIK GYAQHGHGTE ALLLYQRMLD SGIAPNKITF VAVLSACAHC GKVDEGQEYF NTMKETFKIE PEAEHYSCMI DLLGRAGKLE 501: EAERFIDAMP YKPGSVAWAA LLGACRKHKN MALAERAANE LMVMQPLAAT PYVMLANMYA DARKWEEMAS VRKSMRGKRI RKKPGCSWIE VKKKKHVFVA 601: EDWSHPMIRE VNEYLEEMMK KMKKVGYVMD KKWAMVKEDE AGEGDEEMRL GHHSEKLAVA FGLMSTRDGE ELVVVKNLRI CGDCHNAIKF MSAVAGREII 701: VRDNLRFHCF KDGKCSCGDY W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)