AT3G62890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G40405.1); Has 35241 Blast hits to 13566 proteins in 229 species: Archae - 0; Bacteria - 18; Metazoa - 37; Fungi - 30; Plants - 34726; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23246168..23247973 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64950.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKGAAIIAY ANPIFHIRHL KLESFLWNII IRAIVHNVSS PQRHSPISVY LRMRNHRVSP DFHTFPFLLP SFHNPLHLPL GQRTHAQILL FGLDKDPFVR 101: TSLLNMYSSC GDLRSAQRVF DDSGSKDLPA WNSVVNAYAK AGLIDDARKL FDEMPERNVI SWSCLINGYV MCGKYKEALD LFREMQLPKP NEAFVRPNEF 201: TMSTVLSACG RLGALEQGKW VHAYIDKYHV EIDIVLGTAL IDMYAKCGSL ERAKRVFNAL GSKKDVKAYS AMICCLAMYG LTDECFQLFS EMTTSDNINP 301: NSVTFVGILG ACVHRGLINE GKSYFKMMIE EFGITPSIQH YGCMVDLYGR SGLIKEAESF IASMPMEPDV LIWGSLLSGS RMLGDIKTCE GALKRLIELD 401: PMNSGAYVLL SNVYAKTGRW MEVKCIRHEM EVKGINKVPG CSYVEVEGVV HEFVVGDESQ QESERIYAML DEIMQRLREA GYVTDTKEVL LDLNEKDKEI 501: ALSYHSEKLA IAFCLMKTRP GTPVRIIKNL RICGDCHLVM KMISKLFSRE IVVRDCNRFH HFRDGSCSCR DFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)