AT5G16420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:5368034..5369641 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60936.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLSRVNPTR FPPFVASRRL FSASASAASL QQYCTEKPPI KPWPQRLFPK RLVSMITQQQ NIDLALQIFL YAGKSHPGFT HNYDTYHSIL FKLSRARAFD 101: PVESLMADLR NSYPPIKCGE NLFIDLLRNY GLAGRYESSM RIFLRIPDFG VKRSVRSLNT LLNVLIQNQR FDLVHAMFKN SKESFGITPN IFTCNLLVKA 201: LCKKNDIESA YKVLDEIPSM GLVPNLVTYT TILGGYVARG DMESAKRVLE EMLDRGWYPD ATTYTVLMDG YCKLGRFSEA ATVMDDMEKN EIEPNEVTYG 301: VMIRALCKEK KSGEARNMFD EMLERSFMPD SSLCCKVIDA LCEDHKVDEA CGLWRKMLKN NCMPDNALLS TLIHWLCKEG RVTEARKLFD EFEKGSIPSL 401: LTYNTLIAGM CEKGELTEAG RLWDDMYERK CKPNAFTYNV LIEGLSKNGN VKEGVRVLEE MLEIGCFPNK TTFLILFEGL QKLGKEEDAM KIVSMAVMNG 501: KVDKESWELF LKKFAGELDK GVLPLKELLH EISVS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)