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AT2G34400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G08820.1); Has 41759 Blast hits to 14424 proteins in 280 species: Archae - 0; Bacteria - 19; Metazoa - 208; Fungi - 170; Plants - 40611; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004077EMBL:AC004481
EMBL:CP002685EnsemblPlants:AT2G34400EnsemblPlants:AT2G34400.1entrez:818003
Gene3D:1.25.40.10GeneID:818003Genevisible:O64705Gramene:AT2G34400.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF323HOGENOM:HOG000237569InParanoid:O64705
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G34400OMA:VKQLHAH
PaxDb:O64705Pfam:O64705Pfam:PF01535Pfam:PF13041
Pfscan:PS51375PhylomeDB:O64705PIR:T02328PRIDE:O64705
PRO:PR:O64705PROSITE:PS51375ProteinModelPortal:O64705Proteomes:UP000006548
RefSeq:NP_180987.2SMR:O64705STRING:3702.AT2G34400.1SUPFAM:SSF48452
TAIR:AT2G34400TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53033
UniProt:O64705
Coordinates (TAIR10) chr2:+:14516226..14518186
Molecular Weight (calculated) 70535.70 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.16
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLQMLIKPE KLAFSIYRQF PKFKPRQFEE ARRGDLERDF LFLLKKCISV NQLRQIQAQM LLHSVEKPNF LIPKAVELGD FNYSSFLFSV TEEPNHYSFN
101: YMIRGLTNTW NDHEAALSLY RRMKFSGLKP DKFTYNFVFI ACAKLEEIGV GRSVHSSLFK VGLERDVHIN HSLIMMYAKC GQVGYARKLF DEITERDTVS
201: WNSMISGYSE AGYAKDAMDL FRKMEEEGFE PDERTLVSML GACSHLGDLR TGRLLEEMAI TKKIGLSTFL GSKLISMYGK CGDLDSARRV FNQMIKKDRV
301: AWTAMITVYS QNGKSSEAFK LFFEMEKTGV SPDAGTLSTV LSACGSVGAL ELGKQIETHA SELSLQHNIY VATGLVDMYG KCGRVEEALR VFEAMPVKNE
401: ATWNAMITAY AHQGHAKEAL LLFDRMSVPP SDITFIGVLS ACVHAGLVHQ GCRYFHEMSS MFGLVPKIEH YTNIIDLLSR AGMLDEAWEF MERFPGKPDE
501: IMLAAILGAC HKRKDVAIRE KAMRMLMEMK EAKNAGNYVI SSNVLADMKM WDESAKMRAL MRDRGVVKTP GCSWIEIEGE LMEFLAGSDY LQCGREDSGS
601: LFDLLVEEMK RERYEFGYIH L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)