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AT3G24000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43197 Blast hits to 14383 proteins in 288 species: Archae - 1; Bacteria - 6; Metazoa - 112; Fungi - 144; Plants - 42273; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP001297EMBL:CP002686
EnsemblPlants:AT3G24000EnsemblPlants:AT3G24000.1entrez:821984Gene3D:1.25.40.10
GeneID:821984Genevisible:Q9LIQ7GO:GO:0005739GO:GO:0008270
Gramene:AT3G24000.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF897HOGENOM:HOG000237570
InParanoid:Q9LIQ7InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT3G24000PaxDb:Q9LIQ7Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:PF14432Pfam:Q9LIQ7Pfscan:PS51375
PhylomeDB:Q9LIQ7PRIDE:Q9LIQ7PRO:PR:Q9LIQ7PROSITE:PS51375
ProteinModelPortal:Q9LIQ7Proteomes:UP000006548RefSeq:NP_189042.4SMR:Q9LIQ7
STRING:3702.AT3G24000.1SUPFAM:SSF48452TAIR:AT3G24000TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.53465UniProt:Q9LIQ7
Coordinates (TAIR10) chr3:+:8672774..8674881
Molecular Weight (calculated) 75603.90 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.26
Length 665 amino acids
Sequence (TAIR10)
(BLAST)
001: MALRFPPRLL SQLKLSRRLN SLPAPVSEDS EDESLKFPSN DLLLRTSSND LEGSYIPADR RFYNTLLKKC TVFKLLIQGR IVHAHILQSI FRHDIVMGNT
101: LLNMYAKCGS LEEARKVFEK MPQRDFVTWT TLISGYSQHD RPCDALLFFN QMLRFGYSPN EFTLSSVIKA AAAERRGCCG HQLHGFCVKC GFDSNVHVGS
201: ALLDLYTRYG LMDDAQLVFD ALESRNDVSW NALIAGHARR SGTEKALELF QGMLRDGFRP SHFSYASLFG ACSSTGFLEQ GKWVHAYMIK SGEKLVAFAG
301: NTLLDMYAKS GSIHDARKIF DRLAKRDVVS WNSLLTAYAQ HGFGKEAVWW FEEMRRVGIR PNEISFLSVL TACSHSGLLD EGWHYYELMK KDGIVPEAWH
401: YVTVVDLLGR AGDLNRALRF IEEMPIEPTA AIWKALLNAC RMHKNTELGA YAAEHVFELD PDDPGPHVIL YNIYASGGRW NDAARVRKKM KESGVKKEPA
501: CSWVEIENAI HMFVANDERH PQREEIARKW EEVLAKIKEL GYVPDTSHVI VHVDQQEREV NLQYHSEKIA LAFALLNTPP GSTIHIKKNI RVCGDCHTAI
601: KLASKVVGRE IIVRDTNRFH HFKDASILYL VVRGIDQDSN KEKGLVLDMC YKRVGRTYEK SMKSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)