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AT1G06440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G33495.1); Has 412 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJGXeggNOG:ENOG410YDT6EMBL:AC007592EMBL:AK228605
EMBL:BT015739EMBL:BT021137EMBL:CP002684EnsemblPlants:AT1G06440
EnsemblPlants:AT1G06440.1entrez:837156GeneID:837156GO:GO:0016787
Gramene:AT1G06440.1hmmpanther:PTHR31476hmmpanther:PTHR31476:SF15HOGENOM:HOG000243533
InterPro:IPR021099KEGG:ath:AT1G06440OMA:YAFKLQFPfam:PF11955
PhylomeDB:Q9SHI9Proteomes:UP000006548RefSeq:NP_172132.1TAIR:AT1G06440
UniGene:At.42341UniGene:At.74099UniProt:Q9SHI9
Coordinates (TAIR10) chr1:-:1963733..1964905
Molecular Weight (calculated) 44694.40 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.25
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFLLMRSLL VHPCGGSIIN VRSTTTSAQY VASRSRDPVF EKLMDKYKNL LKVIAIQDLT LANPTADPPS LSIEFLSRLS QKLHLNRGAA SFLRKYPHIF
101: HVLYDPVKAE PFCRLTDVAM EISRQEALAI TATLSLVVDR LVRLLSMSIS KSIPLRAVFK VWRELGLPDD FEDSVISKNP HLFKLSDGHE SNTHILELVQ
201: EEEKRLEFEA AVEKWRVVEC SKEDCSVDRT EIQFSFKHSY PPGMRLSKTF KAKVKEWQRL PYVGPYEDMV GKKKSRSGVM GIEKRAVAIA HEFLNLTVEK
301: MVEVEKISHF RKCFGIDLNI RDLFLDHPGM FYVSTKGKRH TVFLREAYER GRLIDPNPVY DARRKLLDLV LLGRHAALSE SGNTSMSEQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)