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AT1G17630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0; Bacteria - 7; Metazoa - 93; Fungi - 89; Plants - 40145; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC022492EMBL:CP002684
EnsemblPlants:AT1G17630EnsemblPlants:AT1G17630.1entrez:838340Gene3D:1.25.40.10
GeneID:838340Genevisible:Q9LNP2Gramene:AT1G17630.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF617HOGENOM:HOG000237569InParanoid:Q9LNP2InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G17630OMA:MWDESKKPaxDb:Q9LNP2
Pfam:PF01535Pfam:PF13041Pfam:Q9LNP2Pfscan:PS51375
PhylomeDB:Q9LNP2PRIDE:Q9LNP2PRO:PR:Q9LNP2PROSITE:PS51375
ProteinModelPortal:Q9LNP2Proteomes:UP000006548RefSeq:NP_173207.1SMR:Q9LNP2
STRING:3702.AT1G17630.1TAIR:AT1G17630TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.51653UniProt:Q9LNP2
Coordinates (TAIR10) chr1:+:6064525..6066720
Molecular Weight (calculated) 82276.60 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.01
Length 731 amino acids
Sequence (TAIR10)
(BLAST)
001: MVHASLWQFR LQIIPWRLRN FCFLTSQCPY TSISSPDTVS VSSYYSLTSN NDQSLFHYFD HLLGLCLTAQ QCRQVHAQVL LSDFIFRSGS LAANLISVYA
101: RLGLLLDARN VFETVSLVLL SDLRLWNSIL KANVSHGLYE NALELYRGMR QRGLTGDGYI LPLILRACRY LGRFGLCRAF HTQVIQIGLK ENLHVVNELL
201: TLYPKAGRMG DAYNLFVEMP VRNRMSWNVM IKGFSQEYDC ESAVKIFEWM QREEFKPDEV TWTSVLSCHS QCGKFEDVLK YFHLMRMSGN AVSGEALAVF
301: FSVCAELEAL SIAEKVHGYV IKGGFEEYLP SRNALIHVYG KQGKVKDAEH LFRQIRNKGI ESWNSLITSF VDAGKLDEAL SLFSELEEMN HVCNVKANVV
401: TWTSVIKGCN VQGRGDDSLE YFRQMQFSKV LANSVTICCI LSICAELPAL NLGREIHGHV IRTSMSENIL VQNALVNMYA KCGLLSEGSL VFEAIRDKDL
501: ISWNSIIKGY GMHGFAEKAL SMFDRMISSG FHPDGIALVA VLSACSHAGL VEKGREIFYS MSKRFGLEPQ QEHYACIVDL LGRVGFLKEA SEIVKNMPME
601: PKVCVLGALL NSCRMHKNVD IAEGIASQLS VLEPERTGSY MLLSNIYSAG GRWEESANVR ALAKKKDLKK VSGSSWIEVK KKKYKFSSGS IVQSEFETIY
701: PVLEDLVSHM LKKGPTHDGN NYEDDLDLWT A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)