suba logo
AT1G68930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 47331 Blast hits to 14466 proteins in 272 species: Archae - 2; Bacteria - 18; Metazoa - 110; Fungi - 135; Plants - 46381; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011665EMBL:CP002684
EnsemblPlants:AT1G68930EnsemblPlants:AT1G68930.1entrez:843226Gene3D:1.25.40.10
GeneID:843226Genevisible:Q9CAA8GO:GO:0008270Gramene:AT1G68930.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF423HOGENOM:HOG000237570InParanoid:Q9CAA8
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT1G68930
OMA:PFSDQIYPaxDb:Q9CAA8Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q9CAA8Pfscan:PS51375PhylomeDB:Q9CAA8
PIR:H96713PRIDE:Q9CAA8PRO:PR:Q9CAA8PROSITE:PS51375
ProteinModelPortal:Q9CAA8Proteomes:UP000006548RefSeq:NP_177059.1SMR:Q9CAA8
STRING:3702.AT1G68930.1SUPFAM:SSF48452TAIR:AT1G68930TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.52442UniProt:Q9CAA8
Coordinates (TAIR10) chr1:+:25918314..25920545
Molecular Weight (calculated) 82754.10 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.11
Length 743 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNYYSVQI KQCIGLGARN QSRYVKMIHG NIIRALPYPE TFLYNNIVHA YALMKSSTYA RRVFDRIPQP NLFSWNNLLL AYSKAGLISE MESTFEKLPD
101: RDGVTWNVLI EGYSLSGLVG AAVKAYNTMM RDFSANLTRV TLMTMLKLSS SNGHVSLGKQ IHGQVIKLGF ESYLLVGSPL LYMYANVGCI SDAKKVFYGL
201: DDRNTVMYNS LMGGLLACGM IEDALQLFRG MEKDSVSWAA MIKGLAQNGL AKEAIECFRE MKVQGLKMDQ YPFGSVLPAC GGLGAINEGK QIHACIIRTN
301: FQDHIYVGSA LIDMYCKCKC LHYAKTVFDR MKQKNVVSWT AMVVGYGQTG RAEEAVKIFL DMQRSGIDPD HYTLGQAISA CANVSSLEEG SQFHGKAITS
401: GLIHYVTVSN SLVTLYGKCG DIDDSTRLFN EMNVRDAVSW TAMVSAYAQF GRAVETIQLF DKMVQHGLKP DGVTLTGVIS ACSRAGLVEK GQRYFKLMTS
501: EYGIVPSIGH YSCMIDLFSR SGRLEEAMRF INGMPFPPDA IGWTTLLSAC RNKGNLEIGK WAAESLIELD PHHPAGYTLL SSIYASKGKW DSVAQLRRGM
601: REKNVKKEPG QSWIKWKGKL HSFSADDESS PYLDQIYAKL EELNNKIIDN GYKPDTSFVH HDVEEAVKVK MLNYHSERLA IAFGLIFVPS GQPIRVGKNL
701: RVCVDCHNAT KHISSVTGRE ILVRDAVRFH RFKDGTCSCG DFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)