AT2G17140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 62164 Blast hits to 14567 proteins in 313 species: Archae - 6; Bacteria - 60; Metazoa - 703; Fungi - 1051; Plants - 58243; Viruses - 0; Other Eukaryotes - 2101 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7462820..7465740 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97751.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 874 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQSLVKALL KNTNNPRLAW RIFKRIFSSP SEESHGISLD ATPTIARILV RAKMHEEIQE LHNLILSSSI QKTKLSSLLS VVSIFAKSNH IDKAFPQFQL 101: VRSRFPENKP SVYLYNLLLE SCIKERRVEF VSWLYKDMVL CGIAPQTYTF NLLIRALCDS SCVDAARELF DEMPEKGCKP NEFTFGILVR GYCKAGLTDK 201: GLELLNAMES FGVLPNKVIY NTIVSSFCRE GRNDDSEKMV EKMREEGLVP DIVTFNSRIS ALCKEGKVLD ASRIFSDMEL DEYLGLPRPN SITYNLMLKG 301: FCKVGLLEDA KTLFESIREN DDLASLQSYN IWLQGLVRHG KFIEAETVLK QMTDKGIGPS IYSYNILMDG LCKLGMLSDA KTIVGLMKRN GVCPDAVTYG 401: CLLHGYCSVG KVDAAKSLLQ EMMRNNCLPN AYTCNILLHS LWKMGRISEA EELLRKMNEK GYGLDTVTCN IIVDGLCGSG ELDKAIEIVK GMRVHGSAAL 501: GNLGNSYIGL VDDSLIENNC LPDLITYSTL LNGLCKAGRF AEAKNLFAEM MGEKLQPDSV AYNIFIHHFC KQGKISSAFR VLKDMEKKGC HKSLETYNSL 601: ILGLGIKNQI FEIHGLMDEM KEKGISPNIC TYNTAIQYLC EGEKVEDATN LLDEMMQKNI APNVFSFKYL IEAFCKVPDF DMAQEVFETA VSICGQKEGL 701: YSLMFNELLA AGQLLKATEL LEAVLDRGFE LGTFLYKDLV ESLCKKDELE VASGILHKMI DRGYGFDPAA LMPVIDGLGK MGNKKEANSF ADKMMEMASV 801: GEVANKVDPN ARDIHQKKHN KNGGNNWQNI LHRDDGSGIA LRSLSRVKKG WGQGDISSFQ PPRVDYLDYW EDDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)