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AT3G22690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:CP002686EnsemblPlants:AT3G22690
EnsemblPlants:AT3G22690.1entrez:821840ExpressionAtlas:F4J1L5Gene3D:1.25.40.10
GeneID:821840GO:GO:0008270Gramene:AT3G22690.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF670InterPro:IPR002885InterPro:IPR011990InterPro:IPR012881
InterPro:IPR032867OMA:DESHPEMPaxDb:F4J1L5Pfam:PF01535
Pfam:PF07939Pfam:PF13041Pfam:PF13812Pfam:PF14432
Pfscan:PS51375PRIDE:F4J1L5PROSITE:PS51375ProteinModelPortal:F4J1L5
Proteomes:UP000006548RefSeq:NP_188908.2SMR:F4J1L5STRING:3702.AT3G22690.1
SUPFAM:SSF48452TAIR:AT3G22690TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.53441UniProt:F4J1L5
Coordinates (TAIR10) chr3:-:8021347..8024534
Molecular Weight (calculated) 104225.00 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.11
Length 938 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLGNVLHL SPMVLATTTT TKPSLLNQSK CTKATPSSLK NCKTIDELKM FHRSLTKQGL DNDVSTITKL VARSCELGTR ESLSFAKEVF ENSESYGTCF
101: MYNSLIRGYA SSGLCNEAIL LFLRMMNSGI SPDKYTFPFG LSACAKSRAK GNGIQIHGLI VKMGYAKDLF VQNSLVHFYA ECGELDSARK VFDEMSERNV
201: VSWTSMICGY ARRDFAKDAV DLFFRMVRDE EVTPNSVTMV CVISACAKLE DLETGEKVYA FIRNSGIEVN DLMVSALVDM YMKCNAIDVA KRLFDEYGAS
301: NLDLCNAMAS NYVRQGLTRE ALGVFNLMMD SGVRPDRISM LSAISSCSQL RNILWGKSCH GYVLRNGFES WDNICNALID MYMKCHRQDT AFRIFDRMSN
401: KTVVTWNSIV AGYVENGEVD AAWETFETMP EKNIVSWNTI ISGLVQGSLF EEAIEVFCSM QSQEGVNADG VTMMSIASAC GHLGALDLAK WIYYYIEKNG
501: IQLDVRLGTT LVDMFSRCGD PESAMSIFNS LTNRDVSAWT AAIGAMAMAG NAERAIELFD DMIEQGLKPD GVAFVGALTA CSHGGLVQQG KEIFYSMLKL
601: HGVSPEDVHY GCMVDLLGRA GLLEEAVQLI EDMPMEPNDV IWNSLLAACR VQGNVEMAAY AAEKIQVLAP ERTGSYVLLS NVYASAGRWN DMAKVRLSMK
701: EKGLRKPPGT SSIQIRGKTH EFTSGDESHP EMPNIEAMLD EVSQRASHLG HVPDLSNVLM DVDEKEKIFM LSRHSEKLAM AYGLISSNKG TTIRIVKNLR
801: VCSDCHSFAK FASKVYNREI ILRDNNRFHY IRQGKCSCGD FCLTDDDLEV LKGCLDLGFG FNYDEIPALC KTLPALELCY SMSQKNLDDK HTPSLQLPIG
901: RSLVPSCDNP DDVKARLKCW AQARRRRFQK GIGRSEFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)