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AT2G22070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007232EMBL:CP002685
EnsemblPlants:AT2G22070EnsemblPlants:AT2G22070.1entrez:816742Gene3D:1.25.40.10
GeneID:816742Genevisible:Q9SHZ8GO:GO:0008270Gramene:AT2G22070.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF43HOGENOM:HOG000237570InParanoid:Q9SHZ8
InterPro:IPR002885InterPro:IPR011990InterPro:IPR019734InterPro:IPR032867
iPTMnet:Q9SHZ8KEGG:ath:AT2G22070OMA:FSACTHAPaxDb:Q9SHZ8
Pfam:PF01535Pfam:PF13041Pfam:PF13176Pfam:PF14432
Pfam:Q9SHZ8Pfscan:PS51375PhylomeDB:Q9SHZ8PIR:F84608
PRIDE:Q9SHZ8PRO:PR:Q9SHZ8PROSITE:PS51375ProteinModelPortal:Q9SHZ8
Proteomes:UP000006548RefSeq:NP_179798.1SMR:Q9SHZ8STRING:3702.AT2G22070.1
SUPFAM:SSF48452TAIR:AT2G22070TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.39486UniProt:Q9SHZ8
Coordinates (TAIR10) chr2:+:9383602..9385962
Molecular Weight (calculated) 88038.10 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.06
Length 786 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAPVPLSLS TLLELCTNLL QKSVNKSNGR FTAQLVHCRV IKSGLMFSVY LMNNLMNVYS KTGYALHARK LFDEMPLRTA FSWNTVLSAY SKRGDMDSTC
101: EFFDQLPQRD SVSWTTMIVG YKNIGQYHKA IRVMGDMVKE GIEPTQFTLT NVLASVAATR CMETGKKVHS FIVKLGLRGN VSVSNSLLNM YAKCGDPMMA
201: KFVFDRMVVR DISSWNAMIA LHMQVGQMDL AMAQFEQMAE RDIVTWNSMI SGFNQRGYDL RALDIFSKML RDSLLSPDRF TLASVLSACA NLEKLCIGKQ
301: IHSHIVTTGF DISGIVLNAL ISMYSRCGGV ETARRLIEQR GTKDLKIEGF TALLDGYIKL GDMNQAKNIF VSLKDRDVVA WTAMIVGYEQ HGSYGEAINL
401: FRSMVGGGQR PNSYTLAAML SVASSLASLS HGKQIHGSAV KSGEIYSVSV SNALITMYAK AGNITSASRA FDLIRCERDT VSWTSMIIAL AQHGHAEEAL
501: ELFETMLMEG LRPDHITYVG VFSACTHAGL VNQGRQYFDM MKDVDKIIPT LSHYACMVDL FGRAGLLQEA QEFIEKMPIE PDVVTWGSLL SACRVHKNID
601: LGKVAAERLL LLEPENSGAY SALANLYSAC GKWEEAAKIR KSMKDGRVKK EQGFSWIEVK HKVHVFGVED GTHPEKNEIY MTMKKIWDEI KKMGYVPDTA
701: SVLHDLEEEV KEQILRHHSE KLAIAFGLIS TPDKTTLRIM KNLRVCNDCH TAIKFISKLV GREIIVRDTT RFHHFKDGFC SCRDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)