AT2G22070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.949 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:9383602..9385962 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 88038.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 786 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDAPVPLSLS TLLELCTNLL QKSVNKSNGR FTAQLVHCRV IKSGLMFSVY LMNNLMNVYS KTGYALHARK LFDEMPLRTA FSWNTVLSAY SKRGDMDSTC 101: EFFDQLPQRD SVSWTTMIVG YKNIGQYHKA IRVMGDMVKE GIEPTQFTLT NVLASVAATR CMETGKKVHS FIVKLGLRGN VSVSNSLLNM YAKCGDPMMA 201: KFVFDRMVVR DISSWNAMIA LHMQVGQMDL AMAQFEQMAE RDIVTWNSMI SGFNQRGYDL RALDIFSKML RDSLLSPDRF TLASVLSACA NLEKLCIGKQ 301: IHSHIVTTGF DISGIVLNAL ISMYSRCGGV ETARRLIEQR GTKDLKIEGF TALLDGYIKL GDMNQAKNIF VSLKDRDVVA WTAMIVGYEQ HGSYGEAINL 401: FRSMVGGGQR PNSYTLAAML SVASSLASLS HGKQIHGSAV KSGEIYSVSV SNALITMYAK AGNITSASRA FDLIRCERDT VSWTSMIIAL AQHGHAEEAL 501: ELFETMLMEG LRPDHITYVG VFSACTHAGL VNQGRQYFDM MKDVDKIIPT LSHYACMVDL FGRAGLLQEA QEFIEKMPIE PDVVTWGSLL SACRVHKNID 601: LGKVAAERLL LLEPENSGAY SALANLYSAC GKWEEAAKIR KSMKDGRVKK EQGFSWIEVK HKVHVFGVED GTHPEKNEIY MTMKKIWDEI KKMGYVPDTA 701: SVLHDLEEEV KEQILRHHSE KLAIAFGLIS TPDKTTLRIM KNLRVCNDCH TAIKFISKLV GREIIVRDTT RFHHFKDGFC SCRDYW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)