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AT4G33170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g33170-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (endoplasmic reticulum marker)

At4g33170-GFP (AA 1-100)endoplasmic reticulum marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g33170-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1); Has 55398 Blast hits to 13784 proteins in 253 species: Archae - 0; Bacteria - 15; Metazoa - 97; Fungi - 52; Plants - 54672; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035525EMBL:AL161583
EMBL:CP002687EnsemblPlants:AT4G33170EnsemblPlants:AT4G33170.1entrez:829454
Gene3D:1.25.40.10GeneID:829454Genevisible:Q9SMZ2GO:GO:0008270
Gramene:AT4G33170.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF577HOGENOM:HOG000237570
InParanoid:Q9SMZ2InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT4G33170OMA:ERALYYHPaxDb:Q9SMZ2Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q9SMZ2Pfscan:PS51375
PhylomeDB:Q9SMZ2PIR:T05197PRIDE:Q9SMZ2PRO:PR:Q9SMZ2
PROSITE:PS51375ProteinModelPortal:Q9SMZ2Proteomes:UP000006548RefSeq:NP_195043.1
SMR:Q9SMZ2STRING:3702.AT4G33170.1TAIR:AT4G33170TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65446UniProt:Q9SMZ2
Coordinates (TAIR10) chr4:-:15995701..15998673
Molecular Weight (calculated) 110821.00 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.04
Length 990 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSTSKAIPF SFHTSLIVQC LRPLRFTSAA SPSSSSSSSS QWFGFLRNAI TSSDLMLGKC THARILTFEE NPERFLINNL ISMYSKCGSL TYARRVFDKM
101: PDRDLVSWNS ILAAYAQSSE CVVENIQQAF LLFRILRQDV VYTSRMTLSP MLKLCLHSGY VWASESFHGY ACKIGLDGDE FVAGALVNIY LKFGKVKEGK
201: VLFEEMPYRD VVLWNLMLKA YLEMGFKEEA IDLSSAFHSS GLNPNEITLR LLARISGDDS DAGQVKSFAN GNDASSVSEI IFRNKGLSEY LHSGQYSALL
301: KCFADMVESD VECDQVTFIL MLATAVKVDS LALGQQVHCM ALKLGLDLML TVSNSLINMY CKLRKFGFAR TVFDNMSERD LISWNSVIAG IAQNGLEVEA
401: VCLFMQLLRC GLKPDQYTMT SVLKAASSLP EGLSLSKQVH VHAIKINNVS DSFVSTALID AYSRNRCMKE AEILFERHNF DLVAWNAMMA GYTQSHDGHK
501: TLKLFALMHK QGERSDDFTL ATVFKTCGFL FAINQGKQVH AYAIKSGYDL DLWVSSGILD MYVKCGDMSA AQFAFDSIPV PDDVAWTTMI SGCIENGEEE
601: RAFHVFSQMR LMGVLPDEFT IATLAKASSC LTALEQGRQI HANALKLNCT NDPFVGTSLV DMYAKCGSID DAYCLFKRIE MMNITAWNAM LVGLAQHGEG
701: KETLQLFKQM KSLGIKPDKV TFIGVLSACS HSGLVSEAYK HMRSMHGDYG IKPEIEHYSC LADALGRAGL VKQAENLIES MSMEASASMY RTLLAACRVQ
801: GDTETGKRVA TKLLELEPLD SSAYVLLSNM YAAASKWDEM KLARTMMKGH KVKKDPGFSW IEVKNKIHIF VVDDRSNRQT ELIYRKVKDM IRDIKQEGYV
901: PETDFTLVDV EEEEKERALY YHSEKLAVAF GLLSTPPSTP IRVIKNLRVC GDCHNAMKYI AKVYNREIVL RDANRFHRFK DGICSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)