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AT1G20230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43615 Blast hits to 14351 proteins in 266 species: Archae - 0; Bacteria - 17; Metazoa - 112; Fungi - 108; Plants - 42635; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC022472EMBL:CP002684
EnsemblPlants:AT1G20230EnsemblPlants:AT1G20230.1entrez:838612Gene3D:1.25.40.10
GeneID:838612Genevisible:Q9LNU6GO:GO:0008270Gramene:AT1G20230.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF157HOGENOM:HOG000237570InParanoid:Q9LNU6
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT1G20230
OMA:PFEPDSCPaxDb:Q9LNU6Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:PF14432Pfam:Q9LNU6Pfscan:PS51375
PhylomeDB:Q9LNU6PIR:A86336PRIDE:Q9LNU6PRO:PR:Q9LNU6
PROSITE:PS51375ProteinModelPortal:Q9LNU6Proteomes:UP000006548RefSeq:NP_173449.1
SMR:Q9LNU6STRING:3702.AT1G20230.1TAIR:AT1G20230TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.41719UniProt:Q9LNU6
Coordinates (TAIR10) chr1:+:7009570..7011852
Molecular Weight (calculated) 84869.20 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.02
Length 760 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKQVLPLIE KIPQSIVGFL ESSSYHWSSS LSKTTQAHAR ILKSGAQNDG YISAKLIASY SNYNCFNDAD LVLQSIPDPT IYSFSSLIYA LTKAKLFTQS
101: IGVFSRMFSH GLIPDSHVLP NLFKVCAELS AFKVGKQIHC VSCVSGLDMD AFVQGSMFHM YMRCGRMGDA RKVFDRMSDK DVVTCSALLC AYARKGCLEE
201: VVRILSEMES SGIEANIVSW NGILSGFNRS GYHKEAVVMF QKIHHLGFCP DQVTVSSVLP SVGDSEMLNM GRLIHGYVIK QGLLKDKCVI SAMIDMYGKS
301: GHVYGIISLF NQFEMMEAGV CNAYITGLSR NGLVDKALEM FELFKEQTME LNVVSWTSII AGCAQNGKDI EALELFREMQ VAGVKPNHVT IPSMLPACGN
401: IAALGHGRST HGFAVRVHLL DNVHVGSALI DMYAKCGRIN LSQIVFNMMP TKNLVCWNSL MNGFSMHGKA KEVMSIFESL MRTRLKPDFI SFTSLLSACG
501: QVGLTDEGWK YFKMMSEEYG IKPRLEHYSC MVNLLGRAGK LQEAYDLIKE MPFEPDSCVW GALLNSCRLQ NNVDLAEIAA EKLFHLEPEN PGTYVLLSNI
601: YAAKGMWTEV DSIRNKMESL GLKKNPGCSW IQVKNRVYTL LAGDKSHPQI DQITEKMDEI SKEMRKSGHR PNLDFALHDV EEQEQEQMLW GHSEKLAVVF
701: GLLNTPDGTP LQVIKNLRIC GDCHAVIKFI SSYAGREIFI RDTNRFHHFK DGICSCGDFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)