AT5G13270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REQUIRED FOR ACCD RNA EDITING 1 (RARE1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:4246954..4249212 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84267.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 752 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTILTVQSSF SSSRVPVIKN ANFDQIPSWV SLKSSTSSPS VKISHKQGQV ENLHLVSLSK HRKLNEAFEF LQEMDKAGVS VSSYSYQCLF EACRELRSLS 101: HGRLLHDRMR MGIENPSVLL QNCVLQMYCE CRSLEDADKL FDEMSELNAV SRTTMISAYA EQGILDKAVG LFSGMLASGD KPPSSMYTTL LKSLVNPRAL 201: DFGRQIHAHV IRAGLCSNTS IETGIVNMYV KCGWLVGAKR VFDQMAVKKP VACTGLMVGY TQAGRARDAL KLFVDLVTEG VEWDSFVFSV VLKACASLEE 301: LNLGKQIHAC VAKLGLESEV SVGTPLVDFY IKCSSFESAC RAFQEIREPN DVSWSAIISG YCQMSQFEEA VKTFKSLRSK NASILNSFTY TSIFQACSVL 401: ADCNIGGQVH ADAIKRSLIG SQYGESALIT MYSKCGCLDD ANEVFESMDN PDIVAWTAFI SGHAYYGNAS EALRLFEKMV SCGMKPNSVT FIAVLTACSH 501: AGLVEQGKHC LDTMLRKYNV APTIDHYDCM IDIYARSGLL DEALKFMKNM PFEPDAMSWK CFLSGCWTHK NLELGEIAGE ELRQLDPEDT AGYVLPFNLY 601: TWAGKWEEAA EMMKLMNERM LKKELSCSWI QEKGKIHRFI VGDKHHPQTQ EIYEKLKEFD GFMEGDMFQC NMTERREQLL DHSERLAIAF GLISVHGNAP 701: APIKVFKNLR ACPDCHEFAK HVSLVTGHEI VIRDSRRFHH FKEGKCSCND YW |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)