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AT3G25970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 41202 Blast hits to 13044 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 58; Plants - 40527; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB023041EMBL:CP002686
EnsemblPlants:AT3G25970EnsemblPlants:AT3G25970.1entrez:822194Gene3D:1.25.40.10
GeneID:822194Genevisible:Q9LU94Gramene:AT3G25970.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF77HOGENOM:HOG000237570InParanoid:Q9LU94InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G25970OMA:MEHYACAPaxDb:Q9LU94
Pfam:PF01535Pfam:PF13041Pfam:Q9LU94Pfscan:PS51375
PhylomeDB:Q9LU94PRIDE:Q9LU94PRO:PR:Q9LU94PROSITE:PS51375
ProteinModelPortal:Q9LU94Proteomes:UP000006548RefSeq:NP_189226.2SMR:Q9LU94
STRING:3702.AT3G25970.1SUPFAM:SSF48452TAIR:AT3G25970TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65157UniProt:Q9LU94
Coordinates (TAIR10) chr3:-:9500116..9502221
Molecular Weight (calculated) 78186.60 Da
IEP (calculated) 6.04
GRAVY (calculated) 0.02
Length 701 amino acids
Sequence (TAIR10)
(BLAST)
001: MKALLASLLE SSLNSFQKLS LTHCYAIKCG SISDIYVSNR ILDSYIKFGF LGYANMLFDE MPKRDSVSWN TMISGYTSCG KLEDAWCLFT CMKRSGSDVD
101: GYSFSRLLKG IASVKRFDLG EQVHGLVIKG GYECNVYVGS SLVDMYAKCE RVEDAFEAFK EISEPNSVSW NALIAGFVQV RDIKTAFWLL GLMEMKAAVT
201: MDAGTFAPLL TLLDDPMFCN LLKQVHAKVL KLGLQHEITI CNAMISSYAD CGSVSDAKRV FDGLGGSKDL ISWNSMIAGF SKHELKESAF ELFIQMQRHW
301: VETDIYTYTG LLSACSGEEH QIFGKSLHGM VIKKGLEQVT SATNALISMY IQFPTGTMED ALSLFESLKS KDLISWNSII TGFAQKGLSE DAVKFFSYLR
401: SSEIKVDDYA FSALLRSCSD LATLQLGQQI HALATKSGFV SNEFVISSLI VMYSKCGIIE SARKCFQQIS SKHSTVAWNA MILGYAQHGL GQVSLDLFSQ
501: MCNQNVKLDH VTFTAILTAC SHTGLIQEGL ELLNLMEPVY KIQPRMEHYA AAVDLLGRAG LVNKAKELIE SMPLNPDPMV LKTFLGVCRA CGEIEMATQV
601: ANHLLEIEPE DHFTYVSLSH MYSDLKKWEE KASVKKMMKE RGVKKVPGWS WIEIRNQVKA FNAEDRSNPL CQDIYMMIKD LTQEMQWLDS DNGVDADSLH
701: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)