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AT5G61940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSNEeggNOG:KOG1887EMBL:CP002688EnsemblPlants:AT5G61940
EnsemblPlants:AT5G61940.1entrez:836315GeneID:836315GO:GO:0016787
GO:GO:0046872Gramene:AT5G61940.1InParanoid:F4K528InterPro:IPR006865
InterPro:IPR006866InterPro:IPR007087iPTMnet:F4K528KEGG:ath:AT5G61940
ncoils:CoilOMA:CLAYEENPaxDb:F4K528Pfam:PF04780
Pfam:PF04781PRIDE:F4K528PROSITE:PS00028ProteinModelPortal:F4K528
Proteomes:UP000006548RefSeq:NP_201000.1scanprosite:PS00028STRING:3702.AT5G61940.1
TAIR:AT5G61940UniGene:At.55673UniProt:F4K528
Coordinates (TAIR10) chr5:+:24868155..24872717
Molecular Weight (calculated) 124654.00 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.45
Length 1094 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSSFMEDDE GAQLLEDAQK LFDNGDHIKA LEIIEDLILV HGEDITAWRL HIREGKMFDD LAKKTEDPDV KFAYFLASAE CFSEDGTLSP ICASSLFLLG
0101: QMLGSVLYYK KSLKKAKQGL SVNSLPSKSD SVAQLSLQAQ RELDKKNKAL LSLINDAESE IASSKTLVGS TVKNTKPKVV ESKKSQDPRE DAFKGLRSYW
0201: VGLDVKIKRD FMKVSIAKLT SFVEGVGHYK EEREVLEKVL TSAKEDREWK FWICRTLCSR KFSSAEECKN HLEQQHAADF KPSSEKDIVK RIGKDWVRKI
0301: IVGSWEPVDA VAATEMIKNQ LADVKAFASK AKNGWSKEWP LAVDEERSKL LKEIKLLLVS FCDLKILSCS IRDWMMCFPA KHLGKLEVSE QSLVDSRLVE
0401: TPHSICFLES QELTQILEFL NHIKCKRNDG TDLVCRAVDS VLGRTRVKEK IDFDPQFSFL LLDKRLLKIN DDQFDDDEGT INVFDPSVHY AKTPVHGDDI
0501: ISWLTDYNSV DKTFPRPIRE HNLDIWLAVL KAVKFTCRTL GNKYAKKLQV VDYDAALTDV ENMCVRENER RRNLPEDQWS RYASLLCDVC EERVPENSLT
0601: TKLFVCAVRD VFEGALHPTL DFLDLEDCLN FIREHKSLSD DKVLQAIDLL KSVVTQKVLL MDTKILLIDN SRMSLLNNLT RLSAFDNRTY ILQLLKPFLL
0701: NEIVNMESKA KSDAAEADLL NELEKEKLQS KEKPQSKEKP QSKKRRDRSK KKPSTSISSS LDKTVEHKPS VNLKPESTSS SLRTIEEGSM EPEDALASET
0801: GQLKISSKTE IQVEATKDDP DMRNMPGEDS LSEHLESVAG EATTRYNSAF DMTLKALLNI KVLKEDLLNQ PFQDHQEEQV PIALQNLFTA VVSEAIQDEG
0901: VYSCLLRDLL TSQEEVISMS SDAANVVVAI LDFWRCWKNP ERESLKDYKL STAKLLWHCY GSRYNQRTEE GCGKTNSVQH ISSRCPPIFT IVLEWENSAT
1001: ENEISETTKA FDWEIDISRL YEEGLAPNTK YRLVSMVGYS EGDEEHICLA YEENRWVNLR RECIAGEDVG DWKNVVRFCG ERKVRPEILL YEAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)