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AT5G61950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSNEeggNOG:KOG1887EMBL:CP002688EnsemblPlants:AT5G61950
EnsemblPlants:AT5G61950.1entrez:836316GeneID:836316GO:GO:0016579
GO:GO:0036459Gramene:AT5G61950.1hmmpanther:PTHR22975hmmpanther:PTHR22975:SF9
InParanoid:F4K529InterPro:IPR001394InterPro:IPR006865InterPro:IPR006866
iPTMnet:F4K529KEGG:ath:AT5G61950ncoils:CoilOMA:PEILIYE
PaxDb:F4K529Pfam:PF00443Pfam:PF04780Pfam:PF04781
PRIDE:F4K529ProteinModelPortal:F4K529Proteomes:UP000006548RefSeq:NP_201001.1
STRING:3702.AT5G61950.1TAIR:AT5G61950UniGene:At.55674UniProt:F4K529
Coordinates (TAIR10) chr5:+:24873566..24878093
Molecular Weight (calculated) 129330.00 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.42
Length 1132 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSFKKDVM AERLYKDAED LIAKGNHIKA LEILEDLISI HWNANDAWLL HIEQGNVFVD LAEKAEDRDM EVAYLLGCVA CFSQHVTVFE LCAQSLFMLG
0101: RNLASVSHYK KCLKKAREAL SDSNSKKLSS STPVAFRAIV SRKKKDLEGF IEDAESMIAA SKTSPLQKPE PKVRDPEKTP EPSKDDFQRF RSYWVGLDVK
0201: IKRDFLKVSI AKLTSFVGGI RKRKAQEALE QALASKKDRK WTFWMCRTKC SKRCSSVEEC RKHFEQQHDA DFKPSSEKDI VKRIGNNWAR KISLGGWEPV
0301: DAVAAVEMIK NQLADVKAFA SKSKNGWSYE WPLAVDEERK QLLQEIKLLL VSFCELKILS GSMRDWVMHF PVKYLAKLEV SKQGLIDSHL SETPQSICFL
0401: ECHELTRILD FLKTIKCKRN DGTDQVCTAV DSVLGRIQVK VKIDFDPQFS FLLLDKRLLK INDVQFDDDE GTINVLDPSA HYAKAPVHGD DIISWLTDYN
0501: SVDKTFPRPI REHNLDIWLA VLKAVQFTCR TLGNKYAKKV QVVDYDAALT DVENMCVSEN ERRKNLPEDQ WSRYASLLCD VCEERVPKNS LTTKLFVRAV
0601: RDVFEGALHP TLDFLDLEDC LNFIREHKSL SDDKVLQAID LLKSVVTQKV LLMDTKILLI DNSRISLLNN LTRLSAFDNR TYILQLLKPF LLNEIVNMES
0701: KAKSDAAEAD LLNELEKEKL QPKEKPQSKE KPQSKKRRDR TKKKPSTSIS SLLDKTVEHK PESTSPSLRT VEEDSMEPED ALASETGRLE ISSKTEIQEE
0801: ATKDDPDMHS RHGEDPLSDH LESAAGEAAA RYNSALDMTL KALLSIKIFK EDLMQNSQQI QDQRQEQVPT ALQNLFTAVV SEAIQDEGVY SCLLSDFLTS
0901: QEEFLSMSSD AAKVVVAVLN LWRCWKNPER ESLVTRLFTL VENKRMSCRK CRRITNSPVQ SSYGIVMAAD SIRELKCAFG NIKFVDILKL IRLGYKMLCD
1001: NKKGGCGKKS YVDHIIRRCP PIFTIVLEWE KSETEKEISE TTKALDWEID ISRLYEEGLE TNTNYRLVSM VGCGEGEEEH VCLAYEKNRW VNLRRECFAG
1101: EDVGDWKNVV RFCGERKVRP EILIYESVRL MA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)