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AT2G36980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 45451 Blast hits to 13631 proteins in 250 species: Archae - 6; Bacteria - 3; Metazoa - 113; Fungi - 146; Plants - 44602; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006922EMBL:AY461626
EMBL:AY461627EMBL:CP002685EnsemblPlants:AT2G36980EnsemblPlants:AT2G36980.1
entrez:818272Gene3D:1.25.40.10GeneID:818272Genevisible:Q9SJK9
GO:GO:0005739Gramene:AT2G36980.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF48
HOGENOM:HOG000243248InParanoid:Q9SJK9InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT2G36980OMA:SIIDACMPaxDb:Q9SJK9Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q9SJK9Pfscan:PS51375
PhylomeDB:Q9SJK9PIR:A84787PRIDE:Q9SJK9PRO:PR:Q9SJK9
PROSITE:PS51375ProteinModelPortal:Q9SJK9Proteomes:UP000006548RefSeq:NP_181235.1
SMR:Q9SJK9STRING:3702.AT2G36980.1TAIR:AT2G36980TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.37481UniProt:Q9SJK9
Coordinates (TAIR10) chr2:+:15531161..15533038
Molecular Weight (calculated) 69100.90 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.02
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVLVRLTSK IASLAKSGRI ASARQVFDGM PELDTVAWNT MLTSYSRLGL HQEAIALFTQ LRFSDAKPDD YSFTAILSTC ASLGNVKFGR KIQSLVIRSG
101: FCASLPVNNS LIDMYGKCSD TLSANKVFRD MCCDSRNEVT WCSLLFAYMN AEQFEAALDV FVEMPKRVAF AWNIMISGHA HCGKLESCLS LFKEMLESEF
201: KPDCYTFSSL MNACSADSSN VVYGRMVHAV MLKNGWSSAV EAKNSVLSFY TKLGSRDDAM RELESIEVLT QVSWNSIIDA CMKIGETEKA LEVFHLAPEK
301: NIVTWTTMIT GYGRNGDGEQ ALRFFVEMMK SGVDSDHFAY GAVLHACSGL ALLGHGKMIH GCLIHCGFQG YAYVGNALVN LYAKCGDIKE ADRAFGDIAN
401: KDLVSWNTML FAFGVHGLAD QALKLYDNMI ASGIKPDNVT FIGLLTTCSH SGLVEEGCMI FESMVKDYRI PLEVDHVTCM IDMFGRGGHL AEAKDLATTY
501: SSLVTDSSNN SSWETLLGAC STHWHTELGR EVSKVLKIAE PSEEMSFVLL SNLYCSTGRW KEGEDVRREM VERGMKKTPG CSWIEVGNQV STFVVGDSSH
601: PRLEELSETL NCLQHEMRNP ETFGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)