AT4G13650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7939611..7942898 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119747.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1064 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNKYIWLVRL WHSKEEPMFL RSVSSSFIFI HGVPRKLKTR TVFPTLCGTR RASFAAISVY ISEDESFQEK RIDSVENRGI RPNHQTLKWL LEGCLKTNGS 0101: LDEGRKLHSQ ILKLGLDSNG CLSEKLFDFY LFKGDLYGAF KVFDEMPERT IFTWNKMIKE LASRNLIGEV FGLFVRMVSE NVTPNEGTFS GVLEACRGGS 0201: VAFDVVEQIH ARILYQGLRD STVVCNPLID LYSRNGFVDL ARRVFDGLRL KDHSSWVAMI SGLSKNECEA EAIRLFCDMY VLGIMPTPYA FSSVLSACKK 0301: IESLEIGEQL HGLVLKLGFS SDTYVCNALV SLYFHLGNLI SAEHIFSNMS QRDAVTYNTL INGLSQCGYG EKAMELFKRM HLDGLEPDSN TLASLVVACS 0401: ADGTLFRGQQ LHAYTTKLGF ASNNKIEGAL LNLYAKCADI ETALDYFLET EVENVVLWNV MLVAYGLLDD LRNSFRIFRQ MQIEEIVPNQ YTYPSILKTC 0501: IRLGDLELGE QIHSQIIKTN FQLNAYVCSV LIDMYAKLGK LDTAWDILIR FAGKDVVSWT TMIAGYTQYN FDDKALTTFR QMLDRGIRSD EVGLTNAVSA 0601: CAGLQALKEG QQIHAQACVS GFSSDLPFQN ALVTLYSRCG KIEESYLAFE QTEAGDNIAW NALVSGFQQS GNNEEALRVF VRMNREGIDN NNFTFGSAVK 0701: AASETANMKQ GKQVHAVITK TGYDSETEVC NALISMYAKC GSISDAEKQF LEVSTKNEVS WNAIINAYSK HGFGSEALDS FDQMIHSNVR PNHVTLVGVL 0801: SACSHIGLVD KGIAYFESMN SEYGLSPKPE HYVCVVDMLT RAGLLSRAKE FIQEMPIKPD ALVWRTLLSA CVVHKNMEIG EFAAHHLLEL EPEDSATYVL 0901: LSNLYAVSKK WDARDLTRQK MKEKGVKKEP GQSWIEVKNS IHSFYVGDQN HPLADEIHEY FQDLTKRASE IGYVQDCFSL LNELQHEQKD PIIFIHSEKL 1001: AISFGLLSLP ATVPINVMKN LRVCNDCHAW IKFVSKVSNR EIIVRDAYRF HHFEGGACSC KDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)