AT3G18970.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : mitochondrial editing factor 20 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
mitochondrial editing factor 20 (MEF20); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G59200.1); Has 30354 Blast hits to 12990 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 30011; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:6543699..6545117 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52561.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 472 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSVFPGPRF LSLLQQNSKT LIQAKQIHAQ LVINGCHDNS LFGKLIGHYC SKPSTESSSK LAHLLVFPRF GHPDKFLFNT LLKCSKPEDS IRIFANYASK 101: SSLLYLNERT FVFVLGACAR SASSSALRVG RIVHGMVKKL GFLYESELIG TTLLHFYAKN GDLRYARKVF DEMPERTSVT WNAMIGGYCS HKDKGNHNAR 201: KAMVLFRRFS CCGSGVRPTD TTMVCVLSAI SQTGLLEIGS LVHGYIEKLG FTPEVDVFIG TALVDMYSKC GCLNNAFSVF ELMKVKNVFT WTSMATGLAL 301: NGRGNETPNL LNRMAESGIK PNEITFTSLL SAYRHIGLVE EGIELFKSMK TRFGVTPVIE HYGCIVDLLG KAGRIQEAYQ FILAMPIKPD AILLRSLCNA 401: CSIYGETVMG EEIGKALLEI EREDEKLSGS ECEDYVALSN VLAHKGKWVE VEKLRKEMKE RRIKTRPGYS FV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)