AT1G74600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 58662 Blast hits to 14057 proteins in 256 species: Archae - 2; Bacteria - 61; Metazoa - 165; Fungi - 118; Plants - 57459; Viruses - 0; Other Eukaryotes - 857 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28025153..28027840 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98657.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNCLANESLN SLKISPFSTS RLLSSVTNFR NQLSFSSKDS SSSSAPFNPF RFFNDQSNSR LCNLRTTKIL QAHLLRRYLL PFDVFLTKSL LSWYSNSGSM 101: ADAAKLFDTI PQPDVVSCNI MISGYKQHRL FEESLRFFSK MHFLGFEANE ISYGSVISAC SALQAPLFSE LVCCHTIKMG YFFYEVVESA LIDVFSKNLR 201: FEDAYKVFRD SLSANVYCWN TIIAGALRNQ NYGAVFDLFH EMCVGFQKPD SYTYSSVLAA CASLEKLRFG KVVQARVIKC GAEDVFVCTA IVDLYAKCGH 301: MAEAMEVFSR IPNPSVVSWT VMLSGYTKSN DAFSALEIFK EMRHSGVEIN NCTVTSVISA CGRPSMVCEA SQVHAWVFKS GFYLDSSVAA ALISMYSKSG 401: DIDLSEQVFE DLDDIQRQNI VNVMITSFSQ SKKPGKAIRL FTRMLQEGLR TDEFSVCSLL SVLDCLNLGK QVHGYTLKSG LVLDLTVGSS LFTLYSKCGS 501: LEESYKLFQG IPFKDNACWA SMISGFNEYG YLREAIGLFS EMLDDGTSPD ESTLAAVLTV CSSHPSLPRG KEIHGYTLRA GIDKGMDLGS ALVNMYSKCG 601: SLKLARQVYD RLPELDPVSC SSLISGYSQH GLIQDGFLLF RDMVMSGFTM DSFAISSILK AAALSDESSL GAQVHAYITK IGLCTEPSVG SSLLTMYSKF 701: GSIDDCCKAF SQINGPDLIA WTALIASYAQ HGKANEALQV YNLMKEKGFK PDKVTFVGVL SACSHGGLVE ESYFHLNSMV KDYGIEPENR HYVCMVDALG 801: RSGRLREAES FINNMHIKPD ALVWGTLLAA CKIHGEVELG KVAAKKAIEL EPSDAGAYIS LSNILAEVGE WDEVEETRKL MKGTGVQKEP GWSSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)