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AT4G32430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 44749 Blast hits to 13591 proteins in 248 species: Archae - 1; Bacteria - 28; Metazoa - 59; Fungi - 99; Plants - 43967; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK227348EMBL:AL034567
EMBL:AL161581EMBL:BT006447EMBL:CP002687EnsemblPlants:AT4G32430
EnsemblPlants:AT4G32430.1entrez:829378Gene3D:1.25.40.10GeneID:829378
Genevisible:Q84MA3GO:GO:0005739Gramene:AT4G32430.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF524HOGENOM:HOG000242511InParanoid:Q84MA3InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT4G32430OMA:GNSFITMPaxDb:Q84MA3
Pfam:PF01535Pfam:PF13041Pfam:Q84MA3Pfscan:PS51375
PhylomeDB:Q84MA3PIR:T05353PRIDE:Q84MA3PRO:PR:Q84MA3
PROSITE:PS51375ProteinModelPortal:Q84MA3Proteomes:UP000006548RefSeq:NP_194969.2
SMR:Q84MA3STRING:3702.AT4G32430.1TAIR:AT4G32430TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.31663UniProt:Q84MA3
Coordinates (TAIR10) chr4:+:15652982..15655273
Molecular Weight (calculated) 85188.60 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.06
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLLNYLHCN RSKSFLFQRF YSPYRIAHKL FDGSSQRNAT TSINHSISES LRRNSPARAL SIFKENLQLG YFGRHMDEVT LCLALKACRG DLKRGCQIHG
101: FSTTSGFTSF VCVSNAVMGM YRKAGRFDNA LCIFENLVDP DVVSWNTILS GFDDNQIALN FVVRMKSAGV VFDAFTYSTA LSFCVGSEGF LLGLQLQSTV
201: VKTGLESDLV VGNSFITMYS RSGSFRGARR VFDEMSFKDM ISWNSLLSGL SQEGTFGFEA VVIFRDMMRE GVELDHVSFT SVITTCCHET DLKLARQIHG
301: LCIKRGYESL LEVGNILMSR YSKCGVLEAV KSVFHQMSER NVVSWTTMIS SNKDDAVSIF LNMRFDGVYP NEVTFVGLIN AVKCNEQIKE GLKIHGLCIK
401: TGFVSEPSVG NSFITLYAKF EALEDAKKAF EDITFREIIS WNAMISGFAQ NGFSHEALKM FLSAAAETMP NEYTFGSVLN AIAFAEDISV KQGQRCHAHL
501: LKLGLNSCPV VSSALLDMYA KRGNIDESEK VFNEMSQKNQ FVWTSIISAY SSHGDFETVM NLFHKMIKEN VAPDLVTFLS VLTACNRKGM VDKGYEIFNM
601: MIEVYNLEPS HEHYSCMVDM LGRAGRLKEA EELMSEVPGG PGESMLQSML GSCRLHGNVK MGAKVAELAM EMKPELSGSY VQMYNIYAEK EEWDKAAEIR
701: KAMRKKNVSK EAGFSWIDVG DTEGSLTMQG FSSGDKSHPK SDEIYRMVEI IGLEMNLEGK VAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)