AT1G68410.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G09160.1); Has 5348 Blast hits to 5347 proteins in 441 species: Archae - 2; Bacteria - 344; Metazoa - 1196; Fungi - 481; Plants - 2242; Viruses - 4; Other Eukaryotes - 1079 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:25650262..25652255 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47043.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASREGKRRN HNHDDEKLVP LAALISRETK AAKMEKPIVR FGQAAQSRKG EDYVLIKTDS LRVPSNSSTA FSVFAVFDGH NGKAAAVYTR ENLLNHVISA 101: LPSGLSRDEW LHALPRALVS GFVKTDKEFQ SRGETSGTTA TFVIVDGWTV TVACVGDSRC ILDTKGGSVS NLTVDHRLED NTEERERVTA SGGEVGRLSI 201: VGGVEIGPLR CWPGGLCLSR SIGDMDVGEF IVPVPFVKQV KLSNLGGRLI IASDGIWDAL SSEVAAKTCR GLSAELAARQ VVKEALRRRG LKDDTTCIVV 301: DIIPPENFQE PPPSPPKKHN NFFKSLLFRK KSNSSNKLSK KLSTVGIVEE LFEEGSAMLA ERLGSGDCSK ESTTGGGIFT CAICQLDLAP SEGISVHAGS 401: IFSTSLKPWQ GPFLCTDCRD KKDAMEGKRP SGVKVI |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)