AT1G47380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2); Has 5162 Blast hits to 5161 proteins in 415 species: Archae - 0; Bacteria - 290; Metazoa - 1152; Fungi - 442; Plants - 2230; Viruses - 7; Other Eukaryotes - 1041 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17373004..17375305 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46424.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTKGEHHTV PLSVLLKRES ANEKIDNPEL IHGQHNQSKK GEDFTLVKTE CQRVMGDGVT TFSVFGLFDG HNGSAAAIYT KENLLNNVLA AIPSDLNRDE 101: WVAALPRALV AGFVKTDKDF QERARTSGTT VTFVIVEGWV VSVASVGDSR CILEPAEGGV YYLSADHRLE INEEERDRVT ASGGEVGRLN TGGGTEIGPL 201: RCWPGGLCLS RSIGDLDVGE YIVPVPYVKQ VKLSSAGGRL IISSDGVWDA ISAEEALDCC RGLPPESSAE HIVKEAVGKK GIRDDTTCIV VDILPLEKPA 301: ASVPPPKKQG KGMLKSMFKR KTSDSSSNIE KEYAEPDVVE ELFEEGSAML SERLDTKYPL CNMFKLFMCA VCQVEVKPGE GVSIHAGSDN CRKLRPWDGP 401: FLCASCQDKK DAMEGKRSSG DRHSSESD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)