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AT1G21070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25053812 (2014): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G76670.1); Has 2012 Blast hits to 2008 proteins in 220 species: Archae - 0; Bacteria - 26; Metazoa - 397; Fungi - 317; Plants - 1060; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC012190EMBL:BT024726
EMBL:CP002684EMBL:KP872774EnsemblPlants:AT1G21070EnsemblPlants:AT1G21070.1
entrez:838703GeneID:838703GO:GO:0005793GO:GO:0005794
GO:GO:0008643GO:GO:0015786GO:GO:0016021GO:GO:0022857
GO:GO:0048354GO:GO:0090480Gramene:AT1G21070.1hmmpanther:PTHR11132
InterPro:IPR004853KEGG:ath:AT1G21070OMA:WLIFDSEPfam:PF03151
PhylomeDB:Q9LPU2PIR:G86343Proteomes:UP000006548RefSeq:NP_564133.1
STRING:3702.AT1G21070.1SUPFAM:0043518TAIR:AT1G21070TCDB:2.A.7.9.13
TMHMM:TMhelixUniGene:At.27824UniProt:Q9LPU2
Coordinates (TAIR10) chr1:-:7376148..7377810
Molecular Weight (calculated) 38046.20 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.53
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKAENEKKP SAVSDVGAWA MNVTSSVGII MANKQLMSSS GFGFSFATTL TGFHFALTAL VGMVSNATGL SASKHVPLWE LLWFSLVANI SIAAMNFSLM
101: LNSVGFYQIS KLSMIPVVCV MEWVLHSKHY SREVKASVMV VVVGVGICTV TDVKVNAKGF ICACTAVFST SLQQISIGSL QKKYSIGSFE LLSKTAPIQA
201: ISLLIFGPFV DYFLSGRFIS TYKMTYSAML CILLSCALAV FCNISQYLCI GRFSATSFQV LGHMKTVCVL TLGWLIFDSE MTFKNIAGMV LAVVGMVIYS
301: WAVELEKQRK SKVIPHGKHS MTEDEIKLLK EGIEHMDLKD MELGNNKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)