AT1G19970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ER lumen protein retaining receptor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1); Has 893 Blast hits to 892 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 180; Plants - 232; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6931194..6932597 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30903.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.67 | ||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKAEKNPIQS VMAWIRRQPP KVKAFLGVVT AMTVLVLLRV IVHEHDNLFV ASEAVHAVGI AVLIYKLTKE KTCAGISLKT QELTALFLAV RLYCSFVMEF 101: DLHTFLDSAT LVTTLWVVYM IRFKLRPTYM EDKDNFAIYF VVIPCAVLSF FIHPSTRHHI INRISWAFCV YLEAVSVLPQ LRVMQNTKIV EPFTAHYVFA 201: LGIARFLSCA HWILQVLDTR GRLLTALGSG LWPVMVLISE IVQTFILADF CYYYVQSLMG GQLVLRLPSG VV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)