suba logo
AT1G27950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 19321705
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 19321705
TAIR : plasma membrane 12805588
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosylphosphatidylinositol-anchored lipid protein transfer 1
Curator
Summary (TAIR10)
Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.
Computational
Description (TAIR10)
glycosylphosphatidylinositol-anchored lipid protein transfer 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 597 Blast hits to 593 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J072eggNOG:ENOG410YMSFEMBL:AC069471EMBL:AK220681
EMBL:AY085407EMBL:AY092956EMBL:AY128712EMBL:CP002684
EnsemblPlants:AT1G27950EnsemblPlants:AT1G27950.1entrez:839688GeneID:839688
Genevisible:Q9C7F7GO:GO:0005576GO:GO:0005783GO:GO:0005794
GO:GO:0005886GO:GO:0006869GO:GO:0008289GO:GO:0009505
GO:GO:0031225GO:GO:0042335GO:GO:0046658GO:GO:0050832
Gramene:AT1G27950.1hmmpanther:PTHR33044hmmpanther:PTHR33044:SF7HOGENOM:HOG000090402
InParanoid:Q9C7F7InterPro:IPR016140KEGG:ath:AT1G27950OMA:GVQEDKL
PaxDb:Q9C7F7Pfam:PF14368Pfam:Q9C7F7PhylomeDB:Q9C7F7
PIR:H86404PRIDE:Q9C7F7PRO:PR:Q9C7F7ProteinModelPortal:Q9C7F7
Proteomes:UP000006548RefSeq:NP_174116.1SMART:SM00499SMR:Q9C7F7
STRING:3702.AT1G27950.1SUPFAM:SSF47699SwissPalm:Q9C7F7TAIR:AT1G27950
tair10-symbols:LTPG1TMHMM:TMhelixUniGene:At.22627UniProt:Q9C7F7
Coordinates (TAIR10) chr1:+:9740740..9741991
Molecular Weight (calculated) 19760.00 Da
IEP (calculated) 7.73
GRAVY (calculated) 0.23
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGLHLHLVL VTMTIVASIA AAAPAAPGGA LADECNQDFQ KVTLCLDFAT GKATIPSKKC CDAVEDIKER DPKCLCFVIQ QAKTGGQALK DLGVQEDKLI
101: QLPTSCQLHN ASITNCPKLL GISPSSPDAA VFTNNATTTP VAPAGKSPAT PATSTDKGGS ASAKDGHAVV ALAVALMAVS FVLTLPRHVT LGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)