AT4G24510.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Involved in C28 to C30 fatty acid elongation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ECERIFERUM 2 (CER2); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: wax biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G13840.1); Has 1252 Blast hits to 1252 proteins in 85 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 1240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:12660929..12662537 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47240.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 421 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEGSPVTSVR LSSVVPASVV GENKPRQLTP MDLAMKLHYV RAVYFFKGAR DFTVADVKNT MFTLQSLLQS YHHVSGRIRM SDNDNDTSAA AIPYIRCNDS 101: GIRVVEANVE EFTVEKWLEL DDRSIDHRFL VYDHVLGPDL TFSPLVFLQI TQFKCGGLCI GLSWAHILGD VFSASTFMKT LGQLVSGHAP TKPVYPKTPE 201: LTSHARNDGE AISIEKIDSV GEYWLLTNKC KMGRHIFNFS LNHIDSLMAK YTTRDQPFSE VDILYALIWK SLLNIRGETN TNVITICDRK KSSTCWNEDL 301: VISVVEKNDE MVGISELAAL IAGEKREENG AIKRMIEQDK GSSDFFTYGA NLTFVNLDEI DMYELEINGG KPDFVNYTIH GVGDKGVVLV FPKQNFARIV 401: SVVMPEEDLA KLKEEVTNMI I |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)