suba logo
AT1G78610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20374526 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mechanosensitive channel of small conductance-like 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).
Protein Annotations
BioGrid:29416eggNOG:COG0668eggNOG:KOG4629EMBL:AC007260
EMBL:BX813849EMBL:CP002684EnsemblPlants:AT1G78610EnsemblPlants:AT1G78610.1
entrez:844197GeneID:844197Genevisible:Q9SYM1GO:GO:0005774
GO:GO:0005886GO:GO:0006820GO:GO:0008381GO:GO:0009506
GO:GO:0016021GO:GO:0034220Gramene:AT1G78610.1hmmpanther:PTHR31618
hmmpanther:PTHR31618:SF1HOGENOM:HOG000239334InParanoid:Q9SYM1InterPro:IPR006685
InterPro:IPR010920InterPro:IPR016688iPTMnet:Q9SYM1KEGG:ath:AT1G78610
OMA:QASGEICPaxDb:Q9SYM1Pfam:PF00924Pfam:Q9SYM1
PhylomeDB:Q9SYM1PIR:G96814PIRSF:PIRSF017209PRIDE:Q9SYM1
PRO:PR:Q9SYM1ProteinModelPortal:Q9SYM1Proteomes:UP000006548RefSeq:NP_177982.1
STRING:3702.AT1G78610.1SUPFAM:SSF50182TAIR:AT1G78610tair10-symbols:MSL6
TMHMM:TMhelixUniGene:At.34269UniProt:Q9SYM1
Coordinates (TAIR10) chr1:-:29569226..29572126
Molecular Weight (calculated) 96609.90 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.21
Length 856 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVDAADRRE VIVKIDGENG NNNGVSGETV GKIWRDGSYD FWTDGEGNLN KGHNAAAVDS DRSAATTGEQ QKDEGFEFRR GEDPPTKLIG QFLHKQQASG
101: EICLDMDLGM DELQSRGLTP VSESPRVSTK RDPVGRRDSR SNTNNNDDGE VVKCSGNNAP IQRSSSTLLK MRTRSRLSDP PTPQLPPQTA DMKSGRIPKS
201: GQMKSGFFGK SPKTQGEEEE DDPFAAEDLP EEYRKDKLSL WIVLEWLSLI LIIAGFVCTL AIPSLRKKKL WELQLWKWES MVLVLICGRL VSSWIVKIVV
301: FFIERNFLLR KRVLYFVYGV RKAVQNCLWL GLVLLAWHFL FDEKVAKAAN TKALRVVTKI FVCLLVGFLL WLVKTLLVKV LASSFHMSTY FDRIQESLFT
401: QYVIETLSGP PLIEIQKNEE EEERISVEVK KFQNPGGVEI QSGAQKSPMK TGKSPFLSHV LSNGGGGGGE NKGITIDSLH KLNPKNVSAW KMKRLMNIIR
501: NGSLTTLDEQ LQDPSLDDDK GNQIRSEFEA KLAARKIFHN VAKPGSKFIY ANDIMRFLPD DEALKTLSLF EGASETNRIS KSSLKNWVVN AFRERRALAL
601: TLNDTKTAVN RLHKMVNIVV GIIILVIWLI ILGITSTKFL VVMSSQVVVV AFIFGNMCKI VFESIIYLFV IHPFDVGDRC EIDGVQMVVE EMNILTTVFL
701: RFDNQKVVYP NSLLWTKSIG NYYRSPDMGD GIEFSIHITT PAEKIILIKQ RITSYIEGKK DHWYPAPMIV FKDMESLNSV RIAVWPTHRM NHQDMGEKWA
801: RRSQLVEEIA KICRELDIEY RLYPLDINVR NLPTSTALPV SDRLPPNWSA PASGSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)