AT1G78610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mechanosensitive channel of small conductance-like 6 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29569226..29572126 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96609.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.82 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 856 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVDAADRRE VIVKIDGENG NNNGVSGETV GKIWRDGSYD FWTDGEGNLN KGHNAAAVDS DRSAATTGEQ QKDEGFEFRR GEDPPTKLIG QFLHKQQASG 101: EICLDMDLGM DELQSRGLTP VSESPRVSTK RDPVGRRDSR SNTNNNDDGE VVKCSGNNAP IQRSSSTLLK MRTRSRLSDP PTPQLPPQTA DMKSGRIPKS 201: GQMKSGFFGK SPKTQGEEEE DDPFAAEDLP EEYRKDKLSL WIVLEWLSLI LIIAGFVCTL AIPSLRKKKL WELQLWKWES MVLVLICGRL VSSWIVKIVV 301: FFIERNFLLR KRVLYFVYGV RKAVQNCLWL GLVLLAWHFL FDEKVAKAAN TKALRVVTKI FVCLLVGFLL WLVKTLLVKV LASSFHMSTY FDRIQESLFT 401: QYVIETLSGP PLIEIQKNEE EEERISVEVK KFQNPGGVEI QSGAQKSPMK TGKSPFLSHV LSNGGGGGGE NKGITIDSLH KLNPKNVSAW KMKRLMNIIR 501: NGSLTTLDEQ LQDPSLDDDK GNQIRSEFEA KLAARKIFHN VAKPGSKFIY ANDIMRFLPD DEALKTLSLF EGASETNRIS KSSLKNWVVN AFRERRALAL 601: TLNDTKTAVN RLHKMVNIVV GIIILVIWLI ILGITSTKFL VVMSSQVVVV AFIFGNMCKI VFESIIYLFV IHPFDVGDRC EIDGVQMVVE EMNILTTVFL 701: RFDNQKVVYP NSLLWTKSIG NYYRSPDMGD GIEFSIHITT PAEKIILIKQ RITSYIEGKK DHWYPAPMIV FKDMESLNSV RIAVWPTHRM NHQDMGEKWA 801: RRSQLVEEIA KICRELDIEY RLYPLDINVR NLPTSTALPV SDRLPPNWSA PASGSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)