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AT1G19440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.872
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 4
Curator
Summary (TAIR10)
Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 4 (KCS4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 9 (TAIR:AT2G16280.1); Has 4090 Blast hits to 4073 proteins in 972 species: Archae - 0; Bacteria - 1351; Metazoa - 0; Fungi - 9; Plants - 2623; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G19440-MONOMEREC:2.3.1.199eggNOG:ENOG410IHMWeggNOG:ENOG410Y5VH
EMBL:AC025808EMBL:BT033044EMBL:CP002684EnsemblPlants:AT1G19440
EnsemblPlants:AT1G19440.1entrez:838528Gene3D:3.40.47.10GeneID:838528
Genevisible:Q9LN49GO:GO:0006633GO:GO:0016021GO:GO:0016747
Gramene:AT1G19440.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561
hmmpanther:PTHR31561:SF15HOGENOM:HOG000238893InParanoid:Q9LN49InterPro:IPR012392
InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039KEGG:00061+2.3.1.180
KEGG:00062+2.3.1.199KEGG:ath:AT1G19440KO:K15397OMA:RRGHRIW
PANTHER:PTHR31561PaxDb:Q9LN49Pfam:PF08392Pfam:PF08541
Pfam:Q9LN49PhylomeDB:Q9LN49PIR:F86327PIRSF:PIRSF036417
PRIDE:Q9LN49PRO:PR:Q9LN49ProteinModelPortal:Q9LN49Proteomes:UP000006548
RefSeq:NP_173376.1SMR:Q9LN49STRING:3702.AT1G19440.1SUPFAM:SSF53901
TAIR:AT1G19440tair10-symbols:KCS4TMHMM:TMhelixUniGene:At.16693
UniPathway:UPA00094UniProt:Q9LN49
Coordinates (TAIR10) chr1:+:6729119..6730669
Molecular Weight (calculated) 57845.30 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.05
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)