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AT3G52940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ergosterol biosynthesis ERG4/ERG24 family
Curator
Summary (TAIR10)
Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.
Computational
Description (TAIR10)
FACKEL (FK); FUNCTIONS IN: delta14-sterol reductase activity; INVOLVED IN: sterol biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: Ergosterol biosynthesis ERG4/ERG24 family (TAIR:AT1G50430.2); Has 1188 Blast hits to 1183 proteins in 251 species: Archae - 2; Bacteria - 118; Metazoa - 269; Fungi - 413; Plants - 205; Viruses - 3; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP67eggNOG:KOG1435EMBL:AK227189EnsemblPlants:AT3G52940
EnsemblPlants:AT3G52940.1entrez:824460ExpressionAtlas:Q0WUH0GeneID:824460
GO:GO:0016021GO:GO:0016628Gramene:AT3G52940.1gramene_pathway:1.3.1.-
gramene_pathway:1.3.1.70gramene_pathway:PWY-2541gramene_pathway:PWY-6663gramene_pathway:PWY66-341
gramene_plant_reactome:1119370gramene_plant_reactome:6875653hmmpanther:PTHR21257InterPro:IPR001171
InterPro:IPR018083KEGG:ath:AT3G52940KO:K00222OMA:LPCGLSH
PaxDb:Q0WUH0Pfam:PF01222Pfam:Q9LDR4PhylomeDB:Q0WUH0
PRIDE:Q0WUH0PROSITE:PS01017PROSITE:PS01018ProteinModelPortal:Q0WUH0
RefSeq:NP_566975.1scanprosite:PS01017scanprosite:PS01018SMR:Q0WUH0
STRING:3702.AT3G52940.1TAIR:AT3G52940tair10-symbols:ELL1tair10-symbols:FK
tair10-symbols:HYD2TMHMM:TMhelixUniGene:At.9856UniProt:Q0WUH0
UniProt:Q9LDR4
Coordinates (TAIR10) chr3:-:19630369..19633112
Molecular Weight (calculated) 41915.60 Da
IEP (calculated) 8.94
GRAVY (calculated) 0.65
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLDMDLGVL LPSLQSVYVL VFYFVYLAVA GEILPGKVIR GVLLSDGSQL RYRCNGLLAL ILLVAILGIC AKLGIVSPLV VADRGLELLS ATFIFCVLVT
101: LALYVTGRSS SNKGSSLKPH VSGNLVHDWW FGIQLNPQFM SIDLKFFFVR AGMMGWLLIN LSILAKSVQD GSLSQSMILY QIFCALYILD YFVHEEYMTS
201: TWDIIAERLG FMLVFGDLLW IPFTFSIQGW WLLHNKVELT VPAIVVNCLV FLIGYMVFRG ANKQKHIFKK NPKTPIWGKP PVVVGGKLLV SGYWGIARHC
301: NYLGDLMLAL SFSLPCGISS PVPYFYPIYL LILLIWRERR DEVRCAEKYK EIWAEYLRLV PWRILPYVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)