AT3G57220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl transferase family 4 protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl transferase family 4 protein; FUNCTIONS IN: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity; INVOLVED IN: polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 4, conserved region (InterPro:IPR018481); BEST Arabidopsis thaliana protein match is: UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (TAIR:AT2G41490.1); Has 6923 Blast hits to 6922 proteins in 2293 species: Archae - 137; Bacteria - 5522; Metazoa - 126; Fungi - 129; Plants - 61; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21174516..21176904 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47177.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTARKRTPSV SNSEKLALPE PASSPTVQKT SVSGEDFQLA PPKLGVIFVI SSLLCSLYLY LLCFHYNVDN ELKRPILINA GLSLVGFFVT LKLIPVAARY 101: VLRRNMFGFD INKRGTPQGE VRVPESLGIV VGIVFLIVAI VFQFFNFTED SVWLVEYNAA LASICFMILL GFVDDVLDVP WRVKLLLPSF ATLPLLMAYA 201: GHTTIVIPKP LVSYIGLEVF DLGRIYKLYM ALLAVFCTNS INIHAGLNGL EIGQTVVIAA AILIHNVMQI GASVDTEYHQ AHAFSIYLTQ PLMATSLAML 301: AYNWYPSAVF VGDTYTVFAG MTMAVVGILG HFSETLLIFF LPQVLNFLLS LPQLAGIVKC PRHRLPKYDP ATGLLTGTKD GTLVNVYLRI FGRKTEKSLC 401: IHLLVFQALA CAFCFMLRHF LAGWYK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)