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AT4G35335.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G41760.2); Has 1055 Blast hits to 1038 proteins in 182 species: Archae - 2; Bacteria - 16; Metazoa - 554; Fungi - 120; Plants - 194; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG2234EMBL:AK176441EMBL:AL022604
EMBL:AL161587EMBL:BT014973EMBL:BT015847EMBL:CP002687
EnsemblPlants:AT4G35335EnsemblPlants:AT4G35335.1entrez:829687GeneID:829687
Genevisible:F4JN00GO:GO:0000139GO:GO:0005351GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0015136GO:GO:0015739
GO:GO:0016021GO:GO:1905039Gramene:AT4G35335.1hmmpanther:PTHR10231
InParanoid:F4JN00InterPro:IPR007271KEGG:ath:AT4G35335KO:K15272
OMA:WKLKSIVPANTHER:PTHR10231PaxDb:F4JN00Pfam:F4JN00
Pfam:PF04142PIR:T06123PIR:T06124PIRSF:PIRSF005799
PRIDE:F4JN00PRO:PR:F4JN00ProteinModelPortal:F4JN00Proteomes:UP000006548
RefSeq:NP_680766.5STRING:3702.AT4G35335.1SUPFAM:0043518TAIR:AT4G35335
TIGRfam:TIGR00803TMHMM:TMhelixUniGene:At.31424UniProt:F4JN00
Coordinates (TAIR10) chr4:+:16807286..16810015
Molecular Weight (calculated) 38980.80 Da
IEP (calculated) 9.66
GRAVY (calculated) 0.43
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYRKIKDED DHDVASDIES VKGKSHTVAS SNIAMATLGV GSSERINWKR KGVVTCALTI LTSSQAILIV WSKRAGKYEY SVTTANFLVG TLKCALSLLA
101: LTRIWKNEGV TDDNRLSTTF DEVKVFPIPA ALYLFKNLLQ YYIFAYVDAP GYQILKNLNI ISTGVLYRII LKRKLSEIQW AGFILLCCGC TTAQLNSNSD
201: RVLQTSLPGW TMAIVMALLS GFAGVYTEAI IKKRPSRNIN VQNFWLYVFG MAFNAVAIVI QDFDAVANKG FFHGYSFITL LMILNHALSG IAVSMVMKYA
301: DNIVKVYSTS VAMLLTAVVS VFLFNFHLSL AFFLGSTVVS VSVYLHSAGK LR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)