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AT1G34020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G09810.1); Has 1634 Blast hits to 1631 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 216; Plants - 891; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC015446EMBL:AC079286
EMBL:BT033114EMBL:CP002684EMBL:KJ667162EMBL:KP872773
EnsemblPlants:AT1G34020EnsemblPlants:AT1G34020.1entrez:840299GeneID:840299
GO:GO:0005338GO:GO:0005794GO:GO:0005886GO:GO:0008643
GO:GO:0015780GO:GO:0016021GO:GO:0022857GO:GO:0055085
Gramene:AT1G34020.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF73InterPro:IPR004853
InterPro:IPR031089KEGG:ath:AT1G34020OMA:TPSEKTQPANTHER:PTHR11132:SF73
Pfam:PF03151PhylomeDB:Q9FDZ5PIR:A86464Proteomes:UP000006548
RefSeq:NP_564433.1STRING:3702.AT1G34020.1TAIR:AT1G34020TMHMM:TMhelix
UniGene:At.43407UniProt:Q9FDZ5
Coordinates (TAIR10) chr1:+:12367359..12368965
Molecular Weight (calculated) 36945.60 Da
IEP (calculated) 9.37
GRAVY (calculated) 0.52
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPVSKADKK AAVDAAAWMF NVVTSVGIII VNKALMATYG YSFATTLTGL HFATTTLMTL VLRCLGYIQP SHLPFTELLR FILFANFSIV GMNVSLMWNS
101: VGFYQIAKLS MIPVSCLLEM VFDKIRYSRD TKLSIGLVLV GVGVCTVTDV SVNTKGFVAA FVAVWSTALQ QYYVHYLQRK YSLNSFNLLG HTAPAQAATL
201: LVVGPFLDYW LTEKRVDMYD YNLVSVLFIT LSCTIAIGTN LSQFICIGRF TAVSFQVLGH MKTILVLIMG FFFFGREGLN LHVVVGMIIA VLGMIWYGNA
301: SSKPGGKERR NYSLPTTRQQ KLGAASDSDD NEDKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)