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AT4G38500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJBFeggNOG:ENOG41101A9EMBL:AY045693EMBL:BT004734
EMBL:CP002687EnsemblPlants:AT4G38500EnsemblPlants:AT4G38500.1entrez:830007
GeneID:830007GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016021GO:GO:0016757Gramene:AT4G38500.1hmmpanther:PTHR12956
hmmpanther:PTHR12956:SF22HOGENOM:HOG000030493InterPro:IPR006852KEGG:ath:AT4G38500
OMA:ISFGYVVPfam:PF04765PhylomeDB:Q94AV6Proteomes:UP000006548
RefSeq:NP_568044.1STRING:3702.AT4G38500.1TAIR:AT4G38500TMHMM:TMhelix
UniGene:At.48960UniGene:At.48961UniGene:At.71095UniProt:Q94AV6
Coordinates (TAIR10) chr4:+:18008418..18010693
Molecular Weight (calculated) 57765.00 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.31
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSDSQRSLS VRLSRRGERS NHYSQSKDAV AGFFSPTRLH ADYTLKKIWK AGFLRLLLVG GIVWMLLILF ALLFHVWSCQ SSLSFFSAIC NKEGRLYVML
101: DTIGFVPKPQ HRCPIPVDYD PDKVLLPSDK TADTIVRNLT YVTEDESSKS QFPLFGGNIS WSEREESFKL KPEMKVHCGF MPRGGAEMSS LDKEYVKKCR
201: FVVATGIFDA YDEPHQPSNI SKRSMNLFCF LMVVDEVSLD FLRKNTTVRK DVEGGIWVGI WRLILLKTPP YDEPRRNGKV PKILTHRLFP EAQYSIWIDG
301: KMELIVDPLL ILERYLWRGK HTFAIAQHKH HRNIYEEADA CKRRKRYARP LVDLHMKIYR YEGLEPWSIK KNTVSDVPEG AVIIREHTAM NNLFSCLWFN
401: EVHLLTPRDQ LSFGYVVDRL KGAFKVFMFQ NCEYNSLFEL HPHIREHSSK IEWVKSLQEL KGKGESLKES RGGFGLWTPY PGDLDSVELP KVVRTSKAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)