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AT2G35100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.
Computational
Description (TAIR10)
ARABINAN DEFICIENT 1 (ARAD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: pectin biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G44930.2); Has 1290 Blast hits to 1285 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 193; Fungi - 4; Plants - 1016; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
BioGrid:3422CAZy:GT47EC:2.4.2.-eggNOG:ENOG410XTFH
eggNOG:KOG1021EMBL:AC004667EMBL:AK228986EMBL:BT015054
EMBL:BT015854EMBL:CP002685EMBL:KJ138874EnsemblPlants:AT2G35100
EnsemblPlants:AT2G35100.1entrez:818076GeneID:818076Genevisible:Q6DBG8
GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016021GO:GO:0016757GO:GO:0045489GO:GO:0071555
Gramene:AT2G35100.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF50HOGENOM:HOG000238383
InParanoid:Q6DBG8InterPro:IPR004263iPTMnet:Q6DBG8KEGG:ath:AT2G35100
OMA:LERQPYWPaxDb:Q6DBG8Pfam:PF03016Pfam:Q6DBG8
PhylomeDB:Q6DBG8PIR:F84764PRIDE:Q6DBG8PRO:PR:Q6DBG8
Proteomes:UP000006548RefSeq:NP_850241.1STRING:3702.AT2G35100.1TAIR:AT2G35100
tair10-symbols:ARAD1TMHMM:TMhelixUniGene:At.37706UniProt:Q6DBG8
Coordinates (TAIR10) chr2:-:14793993..14795564
Molecular Weight (calculated) 50785.20 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.32
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MARKSSLLKR AAIAVVSVIA IYVILNASVS RSLPSSSDLP RQLIREDDDD EGRAPIQPRV RVYMYNLPKR FTYGLIEQHS IARGGIKKPV GDVTTLKYPG
101: HQHMHEWYLF SDLNQPEVDR SGSPIVRVSD PADADLFYVP VFSSLSLIVN AGRPVEAGSG YSDEKMQEGL VEWLEGQEWW RRNAGRDHVI PAGDPNALYR
201: ILDRVKNAVL LVSDFGRLRP DQGSFVKDVV IPYSHRVNLF NGEIGVEDRN TLLFFMGNRY RKDGGKVRDL LFQVLEKEDD VTIKHGTQSR ENRRAATKGM
301: HTSKFCLNPA GDTPSACRLF DSIVSLCVPL IVSDSIELPF EDVIDYRKFS IFVEANAALQ PGFLVQMLRK IKTKKILEYQ REMKSVRRYF DYDNPNGAVK
401: EIWRQVSHKL PLIKLMSNRD RRLVLRNLTE PNCSCLCTNQ TGLITSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)