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AT2G18840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integral membrane Yip1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT4G30260.1); Has 825 Blast hits to 825 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 402; Fungi - 189; Plants - 114; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5080eggNOG:KOG2946EMBL:AC003673EMBL:AC005724
EMBL:BT024504EMBL:CP002685EnsemblPlants:AT2G18840EnsemblPlants:AT2G18840.1
entrez:816399GeneID:816399GO:GO:0005794GO:GO:0005802
GO:GO:0015774GO:GO:0016021Gramene:AT2G18840.1hmmpanther:PTHR21236
hmmpanther:PTHR21236:SF9HOGENOM:HOG000163579InterPro:IPR006977KEGG:ath:AT2G18840
OMA:PLFICVGPfam:PF04893PhylomeDB:O64614PIR:T01612
Proteomes:UP000006548RefSeq:NP_565442.1STRING:3702.AT2G18840.1TAIR:AT2G18840
TCDB:9.B.135.1.2TMHMM:TMhelixUniGene:At.27914UniGene:At.74811
UniProt:O64614
Coordinates (TAIR10) chr2:+:8158288..8159848
Molecular Weight (calculated) 30251.80 Da
IEP (calculated) 8.22
GRAVY (calculated) 0.40
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQGDTVPLH PSSQSDIDEI ENLINESVQS GPGTVLAARP PSPTRPSIPV SSSSSSSPFM QSNLPPLHPS SSAQKVTHVP VPPPLPAVSN SSNFQGASAF
101: GSPPNTLTEP VWDTVKRDLS RIVSNLKLVV FPNPYREDPG KALRDWDLWG PFFFIVFLGL TLSWSASVKK SEVFAVAFAL LAAGAVILTL NVLLLGGHII
201: FFQSLSLLGY CLFPLDVGAV ICMLKDNVIL KMVVVSVTLA WSSWAAYPFM SSAVNPRRKA LALYPVFLMY VSVGFLIIAI N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)