AT3G09320.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.592 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:2862142..2864113 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32378.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 286 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKRKGVGFSL PVTVVMLVIG FIYFASVFTF IDRWFSLTSS PGIANAAAFT ALALMCIYNY SIAVFRDPGR VPLNYMPDVE DPESPVHEIK RKGGDLRYCQ 101: KCSHFKPPRA HHCRVCKRCV LRMDHHCIWI NNCVGHTNYK VFFVFVVYAV TACVYSLVLL VGSLTVEPQD EEEEMGSYLR TIYVISAFLL IPLSIALGVL 201: LGWHIYLILQ NKTTIEYHEG VRAMWLAEKG GQVYKHPYDI GAYENLTLIL GPNILSWLCP TSRHIGSGVR FRTAFDSIPD SSETKH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)