suba logo
AT3G09320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.592
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Protein Annotations
BioGrid:5422BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273
eggNOG:KOG1315EMBL:AC011436EMBL:AY039517EMBL:AY057741
EMBL:CP002686EnsemblPlants:AT3G09320EnsemblPlants:AT3G09320.1entrez:820088
GeneID:820088Genevisible:Q93VV0GO:GO:0000139GO:GO:0008270
GO:GO:0016021GO:GO:0019706Gramene:AT3G09320.1hmmpanther:PTHR22883
hmmpanther:PTHR22883:SF92HOGENOM:HOG000234777InParanoid:Q93VV0IntAct:Q93VV0
InterPro:IPR001594KEGG:ath:AT3G09320KO:K18932OMA:TIEYQEG
PaxDb:Q93VV0Pfam:PF01529Pfam:Q93VV0Pfscan:PS50216
PhylomeDB:Q93VV0PRIDE:Q93VV0PRO:PR:Q93VV0PROSITE:PS50216
ProteinModelPortal:Q93VV0Proteomes:UP000006548RefSeq:NP_566348.1STRING:3702.AT3G09320.1
TAIR:AT3G09320TMHMM:TMhelixUniGene:At.18650UniProt:Q93VV0
Coordinates (TAIR10) chr3:-:2862142..2864113
Molecular Weight (calculated) 32378.60 Da
IEP (calculated) 8.26
GRAVY (calculated) 0.22
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRKGVGFSL PVTVVMLVIG FIYFASVFTF IDRWFSLTSS PGIANAAAFT ALALMCIYNY SIAVFRDPGR VPLNYMPDVE DPESPVHEIK RKGGDLRYCQ
101: KCSHFKPPRA HHCRVCKRCV LRMDHHCIWI NNCVGHTNYK VFFVFVVYAV TACVYSLVLL VGSLTVEPQD EEEEMGSYLR TIYVISAFLL IPLSIALGVL
201: LGWHIYLILQ NKTTIEYHEG VRAMWLAEKG GQVYKHPYDI GAYENLTLIL GPNILSWLCP TSRHIGSGVR FRTAFDSIPD SSETKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)