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AT4G00840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.658
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1315
EMBL:AF013294EMBL:AK229293EMBL:AL161472EMBL:BT020391
EMBL:BT020511EMBL:CP002687EnsemblPlants:AT4G00840EnsemblPlants:AT4G00840.1
entrez:826193GeneID:826193Genevisible:Q5M757GO:GO:0005886
GO:GO:0008270GO:GO:0016021GO:GO:0019706Gramene:AT4G00840.1
hmmpanther:PTHR22883hmmpanther:PTHR22883:SF91HOGENOM:HOG000234777InParanoid:Q5M757
InterPro:IPR001594iPTMnet:Q5M757KEGG:ath:AT4G00840OMA:HVNPFRA
PaxDb:Q5M757Pfam:PF01529Pfam:Q5M757Pfscan:PS50216
PhylomeDB:Q5M757PIR:T01562PRIDE:Q5M757PRO:PR:Q5M757
PROSITE:PS50216ProteinModelPortal:Q5M757Proteomes:UP000006548RefSeq:NP_567193.2
STRING:3702.AT4G00840.1TAIR:AT4G00840TMHMM:TMhelixUniGene:At.24279
UniGene:At.71106UniProt:Q5M757
Coordinates (TAIR10) chr4:-:355483..357105
Molecular Weight (calculated) 32867.40 Da
IEP (calculated) 7.89
GRAVY (calculated) 0.47
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLFRFCSGL KVLGYFMILL VVAVVGVSYY AVVVSTWWPI LIRGDHGALS ALAALIIFVF HFLLIMLLWS YFTTVFTDPG SVPEHFRREM GGGDSLEAGT
101: STDQGAFGSL GYCTKCRNVK PPRCHHCSVC QRCVLKMDHH CVWIVNCVGA RNYKFFLLFL FYTFLETMLD VIVLLPSFIE FFSQAIKHSS SPGKLASLVL
201: AFVLNFAFVL SLLCFVVMHI SLLSSNTTSV EVHEKNGEVR WKYDLGKKKN FEQVFGKKKA FWLLPLYSKD DIDNITSLEG LEFPTCSDID P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)