AT4G00840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.658 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:355483..357105 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32867.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 291 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNLFRFCSGL KVLGYFMILL VVAVVGVSYY AVVVSTWWPI LIRGDHGALS ALAALIIFVF HFLLIMLLWS YFTTVFTDPG SVPEHFRREM GGGDSLEAGT 101: STDQGAFGSL GYCTKCRNVK PPRCHHCSVC QRCVLKMDHH CVWIVNCVGA RNYKFFLLFL FYTFLETMLD VIVLLPSFIE FFSQAIKHSS SPGKLASLVL 201: AFVLNFAFVL SLLCFVVMHI SLLSSNTTSV EVHEKNGEVR WKYDLGKKKN FEQVFGKKKA FWLLPLYSKD DIDNITSLEG LEFPTCSDID P |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)