AT1G33250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.705 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 724 Blast hits to 713 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 168; Plants - 272; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12057524..12059346 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61669.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.54 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLILTVMCS FIPYLYSSSP HRPCSSPISR PPPRIRPCRL SRFATALVAT SALLLASVAW LSLVFSPTTS RCWHLLKDWE DNHLWNKRYH HPIVTPPPPP 101: PSPPSLPALP LFDHEFRNRS LSEIDKLDLS MNHLMFGIAG SSQLWERRKE LVRLWWKPSQ MRGHVWLEEQ VSPEEGDDSL PPIIVSEDSS RFRYTNPTGH 201: PSGLRISRIA MESFRLSLPN VRWFVLGDDD TIFNVHNLLA VLSKYDPSEM VYIGNPSESH SANSYFSHNM AFGGGGIAIS YPLAEALSRI HDDCLDRYPK 301: LYGSDDRLHA CITELGVPLS REPGFHQWDI KGNAHGLLSS HPIAPFVSIH HVEAVNPLYP GLSTLDSLKL LTRAMSLDPR SVLQRSICYD HTHKLTFAIS 401: LGYVVQVFPS ILLPRDLERA ELSFSAWNGI SQPSEFDLDI KLPISSLCKK PILFFLKEVG QEGNATLGTY SRSLVKDDLK TKLLCFPRSL PLHKVDKIQV 501: SGFPLSKNWH LAPRRLCCRA TPTTTNEPLR LTVGQCGKII LGSTISSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)