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AT4G22360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWIB complex BAF60b domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:AY059797EMBL:AY091266
EMBL:CP002687EnsemblPlants:AT4G22360EnsemblPlants:AT4G22360.1entrez:828331
Gene3D:1.10.10.60Gene3D:1.10.245.10GeneID:828331GO:GO:0003677
Gramene:AT4G22360.1hmmpanther:PTHR13844hmmpanther:PTHR13844:SF14InterPro:IPR003121
InterPro:IPR009057InterPro:IPR014876InterPro:IPR019835KEGG:ath:AT4G22360
KO:K15223OMA:LRRHMYKPfam:PF02201Pfam:PF08766
Proteomes:UP000006548RefSeq:NP_567661.1SMART:SM00151SMR:Q93YR5
STRING:3702.AT4G22360.1SUPFAM:0042580SUPFAM:SSF47592TAIR:AT4G22360
UniGene:At.21353UniGene:At.70102UniProt:Q93YR5
Coordinates (TAIR10) chr4:+:11807811..11809660
Molecular Weight (calculated) 42719.70 Da
IEP (calculated) 7.68
GRAVY (calculated) -0.59
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)